PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G0876
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRF
Protein Properties Length: 569aa    MW: 61695.3 Da    PI: 7.4129
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G0876genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.21.6e-24215259145
          WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                  d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  Gh_D02G0876 215 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 259
                  79****************************************985 PP
2QLQ61.32.6e-21144180137
          QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                  ++FT +Q+++L++Q+l+yKy+aan+P+P+ Ll +i+k
  Gh_D02G0876 144 GPFTSSQWMELEHQALIYKYMAANVPIPSTLLIPIRK 180
                  59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009516.5E-12144180IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.5E-15145179IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.563145180IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.663215259IPR014977WRC domain
PfamPF088796.7E-21216258IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MDFGVVGLEG IVGSETSNGF TLVASESETK QKLYGSAFLK QERSGSSEDD WRTSKLAKFD  60
DISASKAVLS QHRNTLFRSN TSIFFDGQQQ QQMLSFSAPK SEALSMGRSS QNVTFPYFHL  120
TSPACTRNTG YNTGGFNGAN MNGGPFTSSQ WMELEHQALI YKYMAANVPI PSTLLIPIRK  180
ALDSAGFSSF SGGLLRPNTS VGWGAFHLGF SNNTDPEPGR CRRTDGKKWR CSRDAVADQK  240
YCERHMNRGR HRSRKPVEGQ SGRSTASTTT TTTKLMHSGS SSSASVVGPN GGNGESNSLT  300
IAQQQFKNLQ PAGESNLSHS GPLNRWLLNK ESIGERMHDT APGNEFGVVS SESLLNPSHK  360
SSSLVKCINF GCSQDLDSQE TESHRSVRQF FDAWPKTQSD CSSIFLPEAD VQSDRTQLSI  420
SMPMALSDFM SSTSSPNNED VTHSPLQLWR ELDPIQMGLE VGSVGNETNW RQANWIPISR  480
ETSVGGPLGE VLHSTNSSSA ECKNSSALNL MTEKCDHSPR LGLSPTGVLQ KTMFGSHSNS  540
SAGSSPRAEN NKNDLLGSTI VHSSSLPAL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.27730.0boll| ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0422962e-55KF042296.1 Codiaeum variegatum GRF2 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016693628.10.0PREDICTED: growth-regulating factor 1-like isoform X1
TrEMBLA0A1U8JXZ60.0A0A1U8JXZ6_GOSHI; growth-regulating factor 1-like isoform X1
STRINGGorai.005G098700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14542886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.12e-87growth-regulating factor 1