PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Gh_D02G0637

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

SBP

Protein Properties

Length: 1040aa MW: 115688 Da PI: 7.8502

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D02G0637	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.7	2.2e-40	157	234	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adls+ak+yhrrhkvC+vhska+++lv + +qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ Gh_D02G0637 157 VCQVEDCRADLSKAKDYHRRHKVCDVHSKATKALVGNAMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHP 234 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	31.949	155	232	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	2.0E-31	155	219	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.75E-37	156	236	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.1E-28	158	231	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	3.95E-7	806	937	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	2.7E-6	808	934	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	3.59E-7	810	921	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1040 aa Download sequence Send to blast
MEGKFGGKPR HFYGPTASDL KAAEKKSVEW DLNDWKWDGD LFTATPLNPV PSDCRSRRLF 60 PDGPETAPNA GSSHSSSSCS EHSSPGNEKG KRKMQNKKRA VVVLDDDDDN DDDDDDGVKG 120 DAGSLKLQLG GQVYPIMDED AKCGKKTKVT GTPCRAVCQV EDCRADLSKA KDYHRRHKVC 180 DVHSKATKAL VGNAMQRFCQ QCSRFHVLQE FDEGKRSCRR RLAGHNRRRR KTHPDNLPTA 240 NSLNDERNSS FLLISLLRIL SSMHSNNSDQ AKDQDLVAHL LRSLANVACS TNGRNLSGFL 300 QGFHGAANAG RSLGNLEKPT DVVSGSTEHV RPSGSASKID DCANLAEWQG AMGYCGTVPT 360 SDLAHRRANN DAQDGILSGS PSRTLIWSGA GFQPRASETG DTVERIRIDK IDLNNVYDDS 420 QDYVENLERS LVLKNPVNGS LHSSVGVPES LKSSPPQLSK NSDLTPSQSP STSGGEAQSR 480 TDRIVFKLFG KNPNDFPIAL RRQILEWLSH SPADIESYIR PGCIILTIYL RLRESAWEEL 540 CYDLGSSLRK LVDVSNDSFW KTGWVYARVQ HSVAFIYNGR VVLDAPLPLK SHRNCKISSI 600 KPIAVSVTER AQFVVKGFNL NQSSTRLLCA VEGKYLVQET CYDLMDAVDP INEQDKLQHL 660 CFLCSIPNVS GRGFIEVEDF GLSSTFFPFI VAEQEVCSEI CTLEGVIETA VPTVDINKKE 720 EKMEIRNQAL DFIHEMGWLL HRNHLNRKLG DVNPNLNLFP FRRFKWLMEF SMDHDWCAVV 780 KKLLGILFDG TVDLGDHSSM EFALLDMCLL HKAVRRNCRP MVELLLRYVP NEVLDKPGSK 840 QKLSVDGNDY GFMFKPNVVG PAGLTPLHMV ASREGCENVL DALTDDPGLV AIEAWKSAQD 900 STGLTPNDYA RLQGHYSYIH LVQRKINKKS ECGYIVLDIP GTPLDCNSKQ KLSDGTRSAM 960 AVSLEIQKIK KKARQDGCKA CEKKLAYGNR RTSLVYRPTM LSMVAIAAVC VCVALLFKSS 1020 PEVLYVFRPF RWELLKYGSS

Sequence ? help Back to Top

Protein Sequence Length: 1040 aa Download sequence Send to blast

MEGKFGGKPR HFYGPTASDL KAAEKKSVEW DLNDWKWDGD LFTATPLNPV PSDCRSRRLF  60
PDGPETAPNA GSSHSSSSCS EHSSPGNEKG KRKMQNKKRA VVVLDDDDDN DDDDDDGVKG  120
DAGSLKLQLG GQVYPIMDED AKCGKKTKVT GTPCRAVCQV EDCRADLSKA KDYHRRHKVC  180
DVHSKATKAL VGNAMQRFCQ QCSRFHVLQE FDEGKRSCRR RLAGHNRRRR KTHPDNLPTA  240
NSLNDERNSS FLLISLLRIL SSMHSNNSDQ AKDQDLVAHL LRSLANVACS TNGRNLSGFL  300
QGFHGAANAG RSLGNLEKPT DVVSGSTEHV RPSGSASKID DCANLAEWQG AMGYCGTVPT  360
SDLAHRRANN DAQDGILSGS PSRTLIWSGA GFQPRASETG DTVERIRIDK IDLNNVYDDS  420
QDYVENLERS LVLKNPVNGS LHSSVGVPES LKSSPPQLSK NSDLTPSQSP STSGGEAQSR  480
TDRIVFKLFG KNPNDFPIAL RRQILEWLSH SPADIESYIR PGCIILTIYL RLRESAWEEL  540
CYDLGSSLRK LVDVSNDSFW KTGWVYARVQ HSVAFIYNGR VVLDAPLPLK SHRNCKISSI  600
KPIAVSVTER AQFVVKGFNL NQSSTRLLCA VEGKYLVQET CYDLMDAVDP INEQDKLQHL  660
CFLCSIPNVS GRGFIEVEDF GLSSTFFPFI VAEQEVCSEI CTLEGVIETA VPTVDINKKE  720
EKMEIRNQAL DFIHEMGWLL HRNHLNRKLG DVNPNLNLFP FRRFKWLMEF SMDHDWCAVV  780
KKLLGILFDG TVDLGDHSSM EFALLDMCLL HKAVRRNCRP MVELLLRYVP NEVLDKPGSK  840
QKLSVDGNDY GFMFKPNVVG PAGLTPLHMV ASREGCENVL DALTDDPGLV AIEAWKSAQD  900
STGLTPNDYA RLQGHYSYIH LVQRKINKKS ECGYIVLDIP GTPLDCNSKQ KLSDGTRSAM  960
AVSLEIQKIK KKARQDGCKA CEKKLAYGNR RTSLVYRPTM LSMVAIAAVC VCVALLFKSS  1020
PEVLYVFRPF RWELLKYGSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-29	157	231	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ622309	0.0	KJ622309.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016693874.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1
TrEMBL	A0A1U8JZZ8	0.0	A0A1U8JZZ8_GOSHI; squamosa promoter-binding-like protein 1
STRING	Gorai.005G071400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3030	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1