PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G0416
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 171aa    MW: 19358 Da    PI: 7.9622
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G0416genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000142244123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C + F++   L  H+++H
  Gh_D02G0416 22 YTCSFCERGFRSAQALGGHMNVH 44
                 9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.45E-71949No hitNo description
Gene3DG3DSA:3.30.160.602.4E-42048IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.1E-52245IPR007087Zinc finger, C2H2
SMARTSM003550.0072244IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.4062249IPR007087Zinc finger, C2H2
PROSITE patternPS0002802444IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MATNQGFEED YLSGFSWPPR SYTCSFCERG FRSAQALGGH MNVHRRDKAR LRQLPPPMDH  60
HGQSPFLNLN LNLNFNPNPN FSSSSLVSSP LPCEMKKWLV NETVVDSTDS TSMKGAKPLF  120
GVKEFKDYGC NNKFMKKKKK NVSLDLDLDL EMGVVSDSKE DLDLELRLGY T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A6e-131744229superman protein
2l1o_A6e-131744229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016714265.11e-125PREDICTED: transcriptional regulator SUPERMAN-like isoform X1
TrEMBLA0A1U8LIB51e-124A0A1U8LIB5_GOSHI; transcriptional regulator SUPERMAN-like isoform X1
STRINGGorai.005G047800.11e-121(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81092432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.13e-24C2H2 family protein