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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Gh_D02G0134 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
GRAS |
Protein Properties |
Length: 382aa MW: 44432.2 Da PI: 7.3078 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gh_D02G0134 | genome | NAU-NBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 85.9 | 6.8e-27 | 11 | 356 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqR.laayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99
+lLl+cA+a+++gdl++a+a+L + la ++ + q +++yf+ AL +r ++ l+p ++ ++ + ++ P++ N
Gh_D02G0134 11 NLLLSCAKAIEDGDLKRADACLHYILILADKRPYSYQTiVVKYFADALVRRAYG--------LHPASS----------YFAFPVDPAPYYHYNSCRIN 90
79**************************99999777762679************........322222..........22233455666666666666 PP
GRAS 100 qaIle....avegeervHiiDfdisqGlQWp.aLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
I + a+ g++r+H iDf+i + + + l++L + + p s+R+ + +p ++ l++ e L+k A +++++ e +v++ ++l++++
Gh_D02G0134 91 GVIKKvigyALMGNRRLHLIDFSIPYYYRFQnSVLRTLPNFFGYPLSVRVSYILPPFLKEYVDLSRQMEFLTKDAVNVKLEDELKVVYGNSLAEVDEC 188
55554112278889************99996379*****9999999*********99999999*********************************** PP
GRAS 193 eLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
e+++k+ +E+++V ++l++l+++ ++e L +k+++P++v++ + ++h++++Fl+ f ++l+y + d +++ +++ k+
Gh_D02G0134 189 EIDFKRrrdDEMVVVYYKFKLEKLVRDAKAMER----ELVRLKEINPTIVIMLDFYSNHTHSNFLTCFKDSLQYSLKTVDYWAEL---HHNLGCKYGW 279
****99999****************99888888....8999****************************************9776...2333333333 PP
GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak...qaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
e +n+ a eg++ + r+ tl +W++ +++aGF+ +pl+++ + + + ll+ ++ +e+++l+lg k+ p++++SaW+
Gh_D02G0134 280 E------CNMEAGEGNNIIRRQPTLTEWQHLFSMAGFSRIPLNHTKDNfsvEGEILLEIMG-------KEEECLILGYKGCPMFFLSAWK 356
3......7888899999999999******************98765432126677777777.......679******************8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 382 aa
Download sequence Send
to blast |
MASSFSDTAL NLLLSCAKAI EDGDLKRADA CLHYILILAD KRPYSYQTIV VKYFADALVR 60 RAYGLHPASS YFAFPVDPAP YYHYNSCRIN GVIKKVIGYA LMGNRRLHLI DFSIPYYYRF 120 QNSVLRTLPN FFGYPLSVRV SYILPPFLKE YVDLSRQMEF LTKDAVNVKL EDELKVVYGN 180 SLAEVDECEI DFKRRRDDEM VVVYYKFKLE KLVRDAKAME RELVRLKEIN PTIVIMLDFY 240 SNHTHSNFLT CFKDSLQYSL KTVDYWAELH HNLGCKYGWE CNMEAGEGNN IIRRQPTLTE 300 WQHLFSMAGF SRIPLNHTKD NFSVEGEILL EIMGKEEECL ILGYKGCPMF FLSAWKPKVE 360 DGHYNSNSTS HKFGQGIFFP FF
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | JX583793 | 2e-50 | JX583793.1 Gossypium hirsutum clone NBRI_GE16930 microsatellite sequence. |