PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G0134
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 382aa    MW: 44432.2 Da    PI: 7.3078
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G0134genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS85.96.8e-27113563374
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqR.laayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  +lLl+cA+a+++gdl++a+a+L  +  la ++  + q  +++yf+ AL +r ++        l+p ++          ++ + ++  P++       N
  Gh_D02G0134  11 NLLLSCAKAIEDGDLKRADACLHYILILADKRPYSYQTiVVKYFADALVRRAYG--------LHPASS----------YFAFPVDPAPYYHYNSCRIN 90 
                  79**************************99999777762679************........322222..........22233455666666666666 PP

         GRAS 100 qaIle....avegeervHiiDfdisqGlQWp.aLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                    I +    a+ g++r+H iDf+i +   +  + l++L +  + p s+R+  + +p  ++   l++  e L+k A +++++ e +v++ ++l++++  
  Gh_D02G0134  91 GVIKKvigyALMGNRRLHLIDFSIPYYYRFQnSVLRTLPNFFGYPLSVRVSYILPPFLKEYVDLSRQMEFLTKDAVNVKLEDELKVVYGNSLAEVDEC 188
                  55554112278889************99996379*****9999999*********99999999*********************************** PP

         GRAS 193 eLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
                  e+++k+   +E+++V   ++l++l+++  ++e      L  +k+++P++v++ +  ++h++++Fl+ f ++l+y  +  d +++    +++   k+  
  Gh_D02G0134 189 EIDFKRrrdDEMVVVYYKFKLEKLVRDAKAMER----ELVRLKEINPTIVIMLDFYSNHTHSNFLTCFKDSLQYSLKTVDYWAEL---HHNLGCKYGW 279
                  ****99999****************99888888....8999****************************************9776...2333333333 PP

         GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak...qaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  e      +n+ a eg++ + r+ tl +W++ +++aGF+ +pl+++  +   + + ll+ ++       +e+++l+lg k+ p++++SaW+
  Gh_D02G0134 280 E------CNMEAGEGNNIIRRQPTLTEWQHLFSMAGFSRIPLNHTKDNfsvEGEILLEIMG-------KEEECLILGYKGCPMFFLSAWK 356
                  3......7888899999999999******************98765432126677777777.......679******************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098516.2861340IPR005202Transcription factor GRAS
PfamPF035142.3E-2411356IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MASSFSDTAL NLLLSCAKAI EDGDLKRADA CLHYILILAD KRPYSYQTIV VKYFADALVR  60
RAYGLHPASS YFAFPVDPAP YYHYNSCRIN GVIKKVIGYA LMGNRRLHLI DFSIPYYYRF  120
QNSVLRTLPN FFGYPLSVRV SYILPPFLKE YVDLSRQMEF LTKDAVNVKL EDELKVVYGN  180
SLAEVDECEI DFKRRRDDEM VVVYYKFKLE KLVRDAKAME RELVRLKEIN PTIVIMLDFY  240
SNHTHSNFLT CFKDSLQYSL KTVDYWAELH HNLGCKYGWE CNMEAGEGNN IIRRQPTLTE  300
WQHLFSMAGF SRIPLNHTKD NFSVEGEILL EIMGKEEECL ILGYKGCPMF FLSAWKPKVE  360
DGHYNSNSTS HKFGQGIFFP FF
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO722783950.0
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5837932e-50JX583793.1 Gossypium hirsutum clone NBRI_GE16930 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012481502.10.0PREDICTED: uncharacterized protein LOC105796364
RefseqXP_016728579.10.0PREDICTED: uncharacterized protein LOC107939725
TrEMBLA0A0D2RDY00.0A0A0D2RDY0_GOSRA; Uncharacterized protein
TrEMBLA0A1U8MSQ20.0A0A1U8MSQ2_GOSHI; uncharacterized protein LOC107939725
STRINGGorai.005G014200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3620222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.13e-30GRAS family protein