PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D02G0132

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 1396aa MW: 161077 Da PI: 5.2121

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D02G0132	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	94.1	2.1e-29	15	380	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 +lLl+cAea+++gdl+ a+a+L+++ la ++ R+++yf+ AL +r ++ l+p ++ ++++ ++ sP++ + + N Gh_D02G0132 15 RLLLSCAEAIEDGDLKSADAYLQNILILADERPyLYKSRVVKYFADALVRRAYG--------LHPASS----------YFTFPVDPSPYYHCGSYLIN 94 79************************9998867899************........222211..........22222344444444444444 PP GRAS 100 qaI........le..avegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfe..fnvlvakr 185 I +e a+ g++++H iDf+i + + ++L + +++p +R+ + +p ++ + + e L++ A+e++v++e ++++ ++ Gh_D02G0132 95 GVIenvihdalMEknALMGNRKLHLIDFSIPYSSFQNSVVRTLPTFSGDPLPVRVSYILPPFLKKYVKFLRQMEFLTRDAKEVNVKLEdeLKLVYGNS 192 4431111000032225667799**********************************887755555555578*********7336778999 PP GRAS 186 ledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 l++++ e+++k+ +E+++V ++l +l+++ ++e L +k+++P++v++ + ++h++++Fl+ f ++++y + +d++e+ Gh_D02G0132 193 LAEVDECEIDLKRrrdDEMVVVYYKFKLDKLVRDAKAMER----ELVRLKEINPTIVIMLDFYSNHTHSNFLTCFKDSFQYSLKTLDCWEEL------ 280 *******9999999************99888888....8999*************************************887...... PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrve.........eesgslvlgWkdrpL 367 + + E+ + + + a eg++ + rh tl +W++ +++aGF+ +pl++++ ++l+++ v+ +d +++ +e+++l+lg k+ p+ Gh_D02G0132 281 DLYFDEEYAWE---CHIEAWEGNNVIRRHPTLTEWQHLFSMAGFSRIPLNHRE--GIDLIVKDVNplNDFFSMSnqswleimgKEEECLILGYKECPM 373 33444444333...3455679999999******************8764..455555555553333444433333366677********* PP GRAS 368 vsvSaWr 374 +++SaW+ Gh_D02G0132 374 FFLSAWK 380 ****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	17.643	1	351	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.3E-27	15	380	IPR005202	Transcription factor GRAS
PROSITE profile	PS50808	11.091	685	739	IPR003656	Zinc finger, BED-type
SMART	SM00614	3.8E-16	685	735	IPR003656	Zinc finger, BED-type
SuperFamily	SSF57667	1.9E-7	688	737	No hit	No description
Pfam	PF02892	4.1E-9	688	728	IPR003656	Zinc finger, BED-type
SuperFamily	SSF53098	1.37E-41	826	1270	IPR012337	Ribonuclease H-like domain
Pfam	PF14372	4.3E-15	1049	1137	IPR025525	hAT-like transposase, RNase-H fold
Pfam	PF05699	2.7E-17	1188	1269	IPR008906	HAT, C-terminal dimerisation domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1396 aa Download sequence Send to blast
MASSLFDIDT DTALRLLLSC AEAIEDGDLK SADAYLQNIL ILADERPYLY KSRVVKYFAD 60 ALVRRAYGLH PASSYFTFPV DPSPYYHCGS YLINGVIENV IHDALMEKNA LMGNRKLHLI 120 DFSIPYSSFQ NSVVRTLPTF SGDPLPVRVS YILPPFLKKY VKFLRQMEFL TRDAKEVNVK 180 LEDELKLVYG NSLAEVDECE IDLKRRRDDE MVVVYYKFKL DKLVRDAKAM ERELVRLKEI 240 NPTIVIMLDF YSNHTHSNFL TCFKDSFQYS LKTLDCWEEL DLYFDEEYAW ECHIEAWEGN 300 NVIRRHPTLT EWQHLFSMAG FSRIPLNHRE GIDLIVKDVN PLNDFFSMSN QSWLEIMGKE 360 EECLILGYKE CPMFFLSAWK PKVEEEHLNF NSSNGKFGQG FNPYPSPLRP LRPFPEGLTL 420 SRVAAVAEIY DILNHLYCEH KFSLALTWVS KVDNMNETMS DPNKKYTFSI QSNSCYSKDW 480 NSYKFMRSCE YKIEQTIIEK ALESKDGYHF EPSLTKSDID DYMYLQRAKH CNVDVVVAIC 540 LQNRYTSNDI YVVEFYWPTT ESEISKSFTP RIFNDLKHME KKFVTVKVQG TEQAISNIPT 600 SSYTARPLKI AEETEDVDAV ELNGVNVQRG VVPNFPSPIT IQSSSKVVAA PSNTLEGPHN 660 QIFPNGDPEI VKANKQEPSK ATQRELRSKV WDHFDRFEED EKQVAKCKHC PKVLTGSSKS 720 GTTHLNNHSK VCPGKKKQNQ ESQLILPVDT NEGSLRFDKK RSHMDLAKMM IKLQCPLDMA 780 EQETFKNFVK GLQPMFEFQS KDILSYIHRI YDEEKEKLQL YFDKLASKFN LTVSLLKNNS 840 GKTIYCCLIS HFIDDGWELK RKILALKTLE HINDTKALGE IIRSLVLEWN ISNKVCSITV 900 DNSFLNDSMV DQIKEICLSD QGSVSSDHWF ISFTLLEDGF REMDGILFKL RKSIEYVTET 960 RHGKLKFQEA VDQVKLQGGK LWDDLSFRLK SDFDILDSAL RSREIFCKLE QIDDNFKLNP 1020 TMEEWENAVA LQSCLKCFDD VKGTQCLPVS LYLPKLCDTY KKFLQLEKSS HSFVTLMKRK 1080 FDRYWSLCNL ALAVASVLDP RLKFKIVELS YRVIYGHDSK MRLNMFHKVL RDVYYEYASE 1140 AKNLTSSASV LDDFNCSTIV LGNDSILDSL SKFASASNFN EEASWKLELE LYLDEPLLPM 1200 DGAFFDILGW WCDKSQRFPI LAKMAQDFLA IPVSISTSCS NISAMINNPA YGSLNPESME 1260 ALVCSENWLE TPKEKSIGEK AEIMKALVCN DSRLESSIGK PDHEKNVDDV IEILNYDLLF 1320 DNNQSDEVQS SSSESEDETT LKEEGPWCEQ DIKAYLLSRF TSKEYKRLDK WRKDELNGYI 1380 ASFDVLIVEY EMIIIT

Sequence ? help Back to Top

Protein Sequence Length: 1396 aa Download sequence Send to blast

MASSLFDIDT DTALRLLLSC AEAIEDGDLK SADAYLQNIL ILADERPYLY KSRVVKYFAD  60
ALVRRAYGLH PASSYFTFPV DPSPYYHCGS YLINGVIENV IHDALMEKNA LMGNRKLHLI  120
DFSIPYSSFQ NSVVRTLPTF SGDPLPVRVS YILPPFLKKY VKFLRQMEFL TRDAKEVNVK  180
LEDELKLVYG NSLAEVDECE IDLKRRRDDE MVVVYYKFKL DKLVRDAKAM ERELVRLKEI  240
NPTIVIMLDF YSNHTHSNFL TCFKDSFQYS LKTLDCWEEL DLYFDEEYAW ECHIEAWEGN  300
NVIRRHPTLT EWQHLFSMAG FSRIPLNHRE GIDLIVKDVN PLNDFFSMSN QSWLEIMGKE  360
EECLILGYKE CPMFFLSAWK PKVEEEHLNF NSSNGKFGQG FNPYPSPLRP LRPFPEGLTL  420
SRVAAVAEIY DILNHLYCEH KFSLALTWVS KVDNMNETMS DPNKKYTFSI QSNSCYSKDW  480
NSYKFMRSCE YKIEQTIIEK ALESKDGYHF EPSLTKSDID DYMYLQRAKH CNVDVVVAIC  540
LQNRYTSNDI YVVEFYWPTT ESEISKSFTP RIFNDLKHME KKFVTVKVQG TEQAISNIPT  600
SSYTARPLKI AEETEDVDAV ELNGVNVQRG VVPNFPSPIT IQSSSKVVAA PSNTLEGPHN  660
QIFPNGDPEI VKANKQEPSK ATQRELRSKV WDHFDRFEED EKQVAKCKHC PKVLTGSSKS  720
GTTHLNNHSK VCPGKKKQNQ ESQLILPVDT NEGSLRFDKK RSHMDLAKMM IKLQCPLDMA  780
EQETFKNFVK GLQPMFEFQS KDILSYIHRI YDEEKEKLQL YFDKLASKFN LTVSLLKNNS  840
GKTIYCCLIS HFIDDGWELK RKILALKTLE HINDTKALGE IIRSLVLEWN ISNKVCSITV  900
DNSFLNDSMV DQIKEICLSD QGSVSSDHWF ISFTLLEDGF REMDGILFKL RKSIEYVTET  960
RHGKLKFQEA VDQVKLQGGK LWDDLSFRLK SDFDILDSAL RSREIFCKLE QIDDNFKLNP  1020
TMEEWENAVA LQSCLKCFDD VKGTQCLPVS LYLPKLCDTY KKFLQLEKSS HSFVTLMKRK  1080
FDRYWSLCNL ALAVASVLDP RLKFKIVELS YRVIYGHDSK MRLNMFHKVL RDVYYEYASE  1140
AKNLTSSASV LDDFNCSTIV LGNDSILDSL SKFASASNFN EEASWKLELE LYLDEPLLPM  1200
DGAFFDILGW WCDKSQRFPI LAKMAQDFLA IPVSISTSCS NISAMINNPA YGSLNPESME  1260
ALVCSENWLE TPKEKSIGEK AEIMKALVCN DSRLESSIGK PDHEKNVDDV IEILNYDLLF  1320
DNNQSDEVQS SSSESEDETT LKEEGPWCEQ DIKAYLLSRF TSKEYKRLDK WRKDELNGYI  1380
ASFDVLIVEY EMIIIT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	758	762	KKRSH

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	72278395	1e-124

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX583793	5e-42	JX583793.1 Gossypium hirsutum clone NBRI_GE16930 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016728589.1	0.0	PREDICTED: uncharacterized protein LOC107939729 isoform X4
Refseq	XP_016728590.1	0.0	PREDICTED: uncharacterized protein LOC107939729 isoform X4
TrEMBL	A0A1U8MP62	0.0	A0A1U8MP62_GOSHI; uncharacterized protein LOC107939729 isoform X4
STRING	Gorai.005G031000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8809	4	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	5e-30	GRAS family protein