PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Gh_D02G0126

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Nin-like

Protein Properties

Length: 968aa MW: 107451 Da PI: 5.716

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D02G0126	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.8	2.4e-29	576	626	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++s+++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Gh_D02G0126 576 EKNVSFSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 626 89***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.859	563	646	IPR003035	RWP-RK domain
Pfam	PF02042	3.4E-26	578	626	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.29E-20	860	951	No hit	No description
SMART	SM00666	8.8E-19	868	950	IPR000270	PB1 domain
PROSITE profile	PS51745	17.042	868	950	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.9E-23	868	950	No hit	No description
Pfam	PF00564	4.7E-15	869	949	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 968 aa Download sequence Send to blast
MEVGEQFGGN TRNLLFEDPF NYSELMNLDA YGGWCSGSAA TDQMFASSGF FSYPSMSHAS 60 FDSTNSIGQS SSTYVESGYA LGGMDSSYNC ADRTVFRQTD EHFSNTVDSK GVELGVRQHT 120 DGNKQNDTSY LGHLLISRPI GRSLDEKMLR ALSLFKDLSG EGILAQVWVP IKHGDQYMLT 180 TSDQPYLLDQ MLLGYREVSR TYTFSAEQKP GSFPGLPGRV FLSRVPEWTS NVIHYSKAEY 240 LRITHAVNHE VRGSIGLPVF QPPEMSCCAV LELVTTKEKP NFHSEMEHVC RALEAVNLRT 300 LARPRFLPQC LSKNQRAALA EITDVLRAVC HAHSLPLALT WIPCNYTEEA ENEYIKMRVR 360 EGNKSWDGKC VLCIEDTACY VNEREMQDFV HACVEHYLEG GQGIAGKALQ SNHPFFSADV 420 KTYDVSDYPL VHHARKFNLN AAVAIRLRST YTSDDDYILE LFLPINMKGS LEQQLLLNNL 480 SGTMQRICRT LRTVSDAEIV GERSKFEFQR VTVPTFPSMA MSQRSSETAL SADSDMNSNH 540 SIPFNESNSI SDGKEADGPP EKAISGLQRP KRSTTEKNVS FSVLQQYFSG SLKDAAKSIG 600 VCPTTLKRIC RQHGISRWPS RKINKVNRSL KKIQTVLDSV QGVDGGLKFD PATGEFVAAG 660 TVIQECNPEK TLMFSNNNLP VGISEAFNHE KSSAPLASCL DGEDSVVKWD ENECSFGGNN 720 NEAARSVLIP SICQEVKKSI VPLNDCSEDS KSVAGAASWI CPENATTGSY FRQGDDKWGL 780 NKGNPKVEVA NCHFVSLNSS SLAATDEMDI RKEGDDGIDE YNRQHTSSSM TDTSNVSGSR 840 LHGSSSSSEK SMEAKNSRMK TCVDSSSKIT IKATYKENTV RFKFEPSAGC FQVYEEVAKR 900 FKVQNGTFQL NYLDDEEEWV MLVSDSDLHE CLEIMEYVGT RSVKFQVRDV PFTMGSSSSS 960 NCFLSRNS

Sequence ? help Back to Top

Protein Sequence Length: 968 aa Download sequence Send to blast

MEVGEQFGGN TRNLLFEDPF NYSELMNLDA YGGWCSGSAA TDQMFASSGF FSYPSMSHAS  60
FDSTNSIGQS SSTYVESGYA LGGMDSSYNC ADRTVFRQTD EHFSNTVDSK GVELGVRQHT  120
DGNKQNDTSY LGHLLISRPI GRSLDEKMLR ALSLFKDLSG EGILAQVWVP IKHGDQYMLT  180
TSDQPYLLDQ MLLGYREVSR TYTFSAEQKP GSFPGLPGRV FLSRVPEWTS NVIHYSKAEY  240
LRITHAVNHE VRGSIGLPVF QPPEMSCCAV LELVTTKEKP NFHSEMEHVC RALEAVNLRT  300
LARPRFLPQC LSKNQRAALA EITDVLRAVC HAHSLPLALT WIPCNYTEEA ENEYIKMRVR  360
EGNKSWDGKC VLCIEDTACY VNEREMQDFV HACVEHYLEG GQGIAGKALQ SNHPFFSADV  420
KTYDVSDYPL VHHARKFNLN AAVAIRLRST YTSDDDYILE LFLPINMKGS LEQQLLLNNL  480
SGTMQRICRT LRTVSDAEIV GERSKFEFQR VTVPTFPSMA MSQRSSETAL SADSDMNSNH  540
SIPFNESNSI SDGKEADGPP EKAISGLQRP KRSTTEKNVS FSVLQQYFSG SLKDAAKSIG  600
VCPTTLKRIC RQHGISRWPS RKINKVNRSL KKIQTVLDSV QGVDGGLKFD PATGEFVAAG  660
TVIQECNPEK TLMFSNNNLP VGISEAFNHE KSSAPLASCL DGEDSVVKWD ENECSFGGNN  720
NEAARSVLIP SICQEVKKSI VPLNDCSEDS KSVAGAASWI CPENATTGSY FRQGDDKWGL  780
NKGNPKVEVA NCHFVSLNSS SLAATDEMDI RKEGDDGIDE YNRQHTSSSM TDTSNVSGSR  840
LHGSSSSSEK SMEAKNSRMK TCVDSSSKIT IKATYKENTV RFKFEPSAGC FQVYEEVAKR  900
FKVQNGTFQL NYLDDEEEWV MLVSDSDLHE CLEIMEYVGT RSVKFQVRDV PFTMGSSSSS  960
NCFLSRNS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX622751	2e-50	JX622751.1 Gossypium hirsutum clone NBRI_GE69618 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016684412.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_016684416.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_016684422.1	0.0	PREDICTED: protein NLP9-like
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A1U8J249	0.0	A0A1U8J249_GOSHI; protein NLP9-like
STRING	EOY04774	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2299	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]