PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D01G2032
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 295aa    MW: 31759.4 Da    PI: 4.4712
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D01G2032genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84e-05268291123
                  EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                  ++C+ Cg+sF +   L++H +  H
  Gh_D01G2032 268 FPCKSCGRSFGSENALQSHSKAkH 291
                  89*****************88777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0052268291IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.489268295IPR007087Zinc finger, C2H2
PROSITE patternPS000280270291IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MEFWGAEVKS GQNFEVELED DGNRILHLSQ VALGEGTGDN KKEKGKETIC LYLKFKNEKF  60
VVGTLSQEKC PQIALDLVLH DKFELSHTGK NGSVYVTGYY VDTSQGSDTE SEEDLLEPTM  120
NLVKSEPPAS DPTTTKQVKI VEPKKDDDSS DEDEEDSSAE DEESSEEQEP RMLVNGENDS  180
DDADSDEDDS EEDSSDEDQK TPEKAGPSKK RPAESSKKTP APEKKAKLKA GGHTATPHTS  240
KKAGKTSAAA AAAAAAQVKQ TPKSGGSFPC KSCGRSFGSE NALQSHSKAK HGTQA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.48880.0boll| ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9644334e-36JX964433.1 Gossypium hirsutum clone NBRI_TRANS-702 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016687494.11e-171PREDICTED: histone deacetylase HDT3-like isoform X4
TrEMBLA0A1U8JGR81e-169A0A1U8JGR8_GOSHI; histone deacetylase HDT3-like isoform X4
STRINGGorai.002G243000.11e-129(Gossypium raimondii)
STRINGEOY081101e-129(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20272667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.15e-26histone deacetylase 2C