PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D01G1960
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 335aa    MW: 37358.1 Da    PI: 7.4772
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D01G1960genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.51.5e-10211071390
                  TT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
           B3  13 sgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                  ++rl +p ++++           +g+++e  + +++de+g +W++ +++rk++++   vl + W +Fv++++L+egD v+++ ++++++
  Gh_D01G1960  21 NRRLAVPMEYFNMEhfpkpgaslEGNPRE--DFVVKDEKGCVWNLSCSIRKQPNHpkPVLINEWIHFVQSKKLREGDRVIIYGEQDETG 107
                  56677777775333478888877788777..69****************9999999999999********************8777666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.23E-119110IPR015300DNA-binding pseudobarrel domain
CDDcd100172.06E-1210100No hitNo description
Gene3DG3DSA:2.40.330.101.1E-1510120IPR015300DNA-binding pseudobarrel domain
PfamPF023623.6E-821109IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MVILGLPMII LEKRLSKTDI NRRLAVPMEY FNMEHFPKPG ASLEGNPRED FVVKDEKGCV  60
WNLSCSIRKQ PNHPKPVLIN EWIHFVQSKK LREGDRVIIY GEQDETGLMQ LRIKAEKCTG  120
SYEGPCFPFM NQNPDRNKGL SSHSSSSEST ATFQPSETED HSAEVLSHEL GQTTATTTPG  180
IDKEHIPTTN STSQDIARYK MKRPRLSSSL ELTLKPTTTE YHLADVLNHE LGRITATTTP  240
SITKEHIPTN HSTSQDIARH KTKGPRLSPS VELTLKPATT EGMTAGTSSS IDKNLAPTFH  300
SHSQDIGSYN TETPNLSLNL GLTLKPTYMQ DTTHK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5SUC60.0A0A2P5SUC6_GOSBA; Uncharacterized protein
STRINGGorai.002G234300.11e-177(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2208034