PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D01G1850
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 218aa    MW: 24533.6 Da    PI: 4.8944
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D01G1850genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000132547123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+Cp C k F++   L  H++ H
  Gh_D01G1850 25 YECPSCFKIFNSTPALCGHQNAH 47
                 99******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.9722552IPR007087Zinc finger, C2H2
PROSITE patternPS0002802747IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MAQPGESDSK GKAVVVDLEE PKAEYECPSC FKIFNSTPAL CGHQNAHRLV KEPMKMSPVL  60
AAVLNNPLPP FHKPFLIPPK TKPAANKELI SKQPTANQSP RHHPYKRHDE EANATDQLQD  120
KLMKQTTQEG EDFLRQLIRN EAQYEYNDQE EYTDTDTQCL TMDLLGEWMP ISGFGDDGHH  180
LGTPRKYPME MEREADLQIG LSATASTGDL DLELKLGF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5RCZ41e-162A0A2P5RCZ4_GOSBA; Uncharacterized protein
STRINGGorai.002G223300.11e-160(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2228334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05120.15e-06C2H2 family protein