PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D01G1815 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 306aa MW: 34656.9 Da PI: 7.0513 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56 | 9.4e-18 | 25 | 72 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd ll ++++++G g+W+ a++ g++Rt+k+c++rw++yl Gh_D01G1815 25 RGPWTLEEDTLLTHYIARHGEGRWNMLAKCAGLKRTGKSCRLRWLNYL 72 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.6 | 1e-16 | 78 | 121 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++ Gh_D01G1815 78 RGNLTPQEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 121 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.675 | 20 | 72 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.24E-31 | 23 | 119 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.8E-15 | 24 | 74 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-15 | 25 | 72 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-23 | 26 | 79 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.23E-11 | 27 | 72 | No hit | No description |
PROSITE pattern | PS00175 | 0 | 40 | 49 | IPR001345 | Phosphoglycerate/bisphosphoglycerate mutase, active site |
PROSITE profile | PS51294 | 25.751 | 73 | 127 | IPR017930 | Myb domain |
SMART | SM00717 | 2.7E-15 | 77 | 125 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 78 | 121 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-23 | 80 | 126 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.82E-12 | 82 | 121 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009686 | Biological Process | gibberellin biosynthetic process | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003824 | Molecular Function | catalytic activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MRAAMPPINT KNMSTPLEEE SELRRGPWTL EEDTLLTHYI ARHGEGRWNM LAKCAGLKRT 60 GKSCRLRWLN YLKPDIKRGN LTPQEQLLIL ELHSKWGNRW SKIAQHLPGR TDNEIKNYWR 120 TRVQKQARQL NIESNSQRFL DAVRCFWMPR LVQKVEQASP SSSSSSSSSS SYLKEMCTQS 180 SVPSQLSSCC TVPSFPTVSP LANKTTDISN SSSVTTQNIC PTDSINNISD QTEIPQHLTG 240 SNVYGHTTLD QCYNIDSNDY GMEGISFASI SGVGFYEGTP SEGNWMCNEM SDDLWNMDDI 300 WQLRSI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 8e-25 | 22 | 127 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves and flowers. {ECO:0000269|PubMed:19529828}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00216 | DAP | Transfer from AT1G68320 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243092 | 0.0 | AC243092.1 Gossypioides kirkii clone GKH058K14-jmr, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012467885.1 | 0.0 | PREDICTED: myb-related protein 305-like | ||||
Swissprot | Q9C9G7 | 5e-90 | MYB62_ARATH; Transcription factor MYB62 | ||||
TrEMBL | A0A0D2RAK1 | 0.0 | A0A0D2RAK1_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.002G218600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2632 | 25 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68320.1 | 3e-90 | myb domain protein 62 |
Publications ? help Back to Top | |||
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