PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D01G1783
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TCP
Protein Properties Length: 548aa    MW: 57780.2 Da    PI: 7.2496
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D01G1783genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP131.67.5e-411702753114
          TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaakskk 99 
                  + k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++  + s +ss+s+ s++       +sk+
  Gh_D01G1783 170 PVKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNISLRSSGSTLSAP-------PSKS 260
                  5699****************************************************************9997777777777744444.......3333 PP

          TCP 100 sqksaasalnlakes 114
                  +++s + al+la ++
  Gh_D01G1783 261 APHSFHGALALASHH 275
                  333333333333322 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.0E-39174274IPR005333Transcription factor, TCP
PROSITE profilePS5136928.496175229IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MELTDLQSNK QTKNNSSSSN NNNNNSAEPH HQSLQQHHLQ HQKQSASPQL VVPFDGTRSS  60
GPSSGNPFNM GSISHLHPHH PFHHLLLHPA SSTTTTTTTP PLPSSSSSSS SSSSASTTTT  120
NPPQLVDASL AIATRSTSLN IDSKNQTDLP ISSTTTPAST TTTTTTANPP VKRSTKDRHT  180
KVDGRGRRIR MPATCAARVF QLTRELGHKS DGETIEWLLQ QAEPAIIAAT GTGTIPANFS  240
TLNISLRSSG STLSAPPSKS APHSFHGALA LASHHHHHHP YEEGFAHSAL LGFQQQHLLT  300
ADQIAEALPG GGGGDGGNLS ENYMRKRFRE DLFKDDDQQQ GESGSGGGDG SPIKAFKSGL  360
TQLSKPQHDA GSSALPRPSN ILPGTAMWAV APAPSSGAGS TFWMLPMSAG ACGPSVAPSA  420
ATGAGPSDHP QMWPFGTANQ ASGNTLQAPL HFLPRFNLPG NVEFQGGRAS PLQLGSMLMQ  480
QQQQQQPHHH LGLGMSDSNL GMLAALNAYS RGGSNVNSDQ NNPLEHHHQQ HQPQGTDSGD  540
DQDPNTSQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.74540.0boll| ovule
Functional Description ? help Back to Top
Source Description
UniProtCan specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5274910.0HQ527491.1 Gossypium herbaceum clone NBRI_C_7085 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016707574.10.0PREDICTED: transcription factor TCP8-like
SwissprotQ9C5184e-88TCP8_ARATH; Transcription factor TCP8
TrEMBLA0A1U8L3E40.0A0A1U8L3E4_GOSHI; transcription factor TCP8-like
STRINGGorai.002G215000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102182433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.11e-61TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]