PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D01G1768
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 490aa    MW: 54799.9 Da    PI: 6.3225
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D01G1768genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.57.3e-231562249
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 +i+++sn qvtfskRr g++KKA+EL++LC++e+a+i+fs+ +k++ +
  Gh_D01G1768 15 KIKDESNLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPGNKVFSF 62
                 599*****************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.1E-33665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.6666IPR002100Transcription factor, MADS-box
CDDcd002651.38E-34780No hitNo description
SuperFamilySSF554552.09E-27779IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-18828IPR002100Transcription factor, MADS-box
PfamPF003193.2E-251562IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-182843IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-184364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009960Biological Processendosperm development
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MVKKTLGRQK IEMVKIKDES NLQVTFSKRR SGLFKKASEL CTLCGVEIAI IVFSPGNKVF  60
SFGHPDVENI LNRYVHNTKD TSPTWQLIEA HRNAIILRLN AQLTEMMSQI EAQKKRGEEL  120
DKMRKASQEQ NWWESPIEEL SLPQLQFLRS AMAELKKIVQ REAEQLIIQN TNCQQLFPGS  180
SSQGTNTNSK QFFIGSSSQE MDTNRQQFFP GSSSQGMDTN PQQFFTGSSS QGMDTNPQQF  240
FTGSSSQGMN TNPRHPPQFF SPPQHPPQFF TRSSSQGMDT NPFTRSSIQG MDTNPQLFNE  300
KSSQGMETNP QHPPQFFTGS SIQGMDTNPQ QFFTRSSSQG MDTNPQHLPQ FFTGSSIQGM  360
DTNPQQFFTR SSIQGMDTNP RQLFPEKSSQ GMDTNPQQFF TGSSIQEMDR NPSLFFIGSS  420
SQGGTPNYET MNNNMALNAN RMGGEYIDPN MIAPTPNYNP NPPAEGHIYP NPEGSDILAP  480
TSPGFGSGLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A3e-17697185MEF2 CHIMERA
6bz1_B3e-17697185MEF2 CHIMERA
6bz1_C3e-17697185MEF2 CHIMERA
6bz1_D3e-17697185MEF2 CHIMERA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469150.10.0PREDICTED: agamous-like MADS-box protein AGL15 isoform X1
TrEMBLA0A2P5QJA70.0A0A2P5QJA7_GOSBA; Uncharacterized protein
STRINGGorai.002G213500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2474734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-63AGAMOUS-like 62