![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_D01G1495 | ||||||||
Common Name | SPL8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 290aa MW: 32086 Da PI: 9.5764 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 132.2 | 1.8e-41 | 24 | 100 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC+adls++++yhrrhkvCevhsk+p+v+++g+eqrfCqqCsrfh l efDe+krsCr+rL++hn+rrrk+q+ Gh_D01G1495 24 CLVDGCTADLSQCRDYHRRHKVCEVHSKTPKVIIRGQEQRFCQQCSRFHCLAEFDEGKRSCRKRLDGHNRRRRKPQP 100 **************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.9E-34 | 17 | 85 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.573 | 21 | 98 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.7E-38 | 22 | 102 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.1E-30 | 24 | 97 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 290 aa Download sequence Send to blast |
MEPSSSAPFK RARPPGNRNQ VPSCLVDGCT ADLSQCRDYH RRHKVCEVHS KTPKVIIRGQ 60 EQRFCQQCSR FHCLAEFDEG KRSCRKRLDG HNRRRRKPQP QPQPHSLSVN PGRCLSNLQG 120 SRHLPSSSPQ IFATTAITSS WLGTAKMEPD IGSESSRNGF FRGSFPHSYK REEQLSLLQT 180 NHSSLHGVSV YQLPLLSNGV GSSQKMFSNA IDSDRALSLL SSQPAETREI GLKPMVLSGP 240 TSSLIPNMQY NGVAMEGEHV LATDGNDNTN IYGQEMFGSA NGTSQRLSFS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-29 | 24 | 97 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 80 | 97 | KRSCRKRLDGHNRRRRKP |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Strongly expressed in immature ears and weakly in husks. Found in the inflorescence meristem of the developing ear, in the spikelet pair primordia, the glume primordia, the cupule forming region and other floral organs. Not detected in other tissues. {ECO:0000269|PubMed:16079849}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | SBP transcriptional regulator probably involved in the domestication of maize (PubMed:16079849). Acts as a transcriptional repressor binding to a 5'-GTAC-3' motif (PubMed:25943393). May repress the growth of lateral branches in length and numbers (PubMed:25943393). {ECO:0000269|PubMed:16079849, ECO:0000269|PubMed:25943393}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ622316 | 0.0 | KJ622316.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL8) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016706463.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 13A | ||||
Refseq | XP_016706464.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 13A | ||||
Refseq | XP_016706465.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 13A | ||||
Swissprot | Q49I55 | 4e-48 | TGA1W_MAIZE; Teosinte glume architecture 1 | ||||
TrEMBL | A0A1U8L094 | 0.0 | A0A1U8L094_GOSHI; squamosa promoter-binding-like protein 13A | ||||
STRING | Gorai.002G181700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4111 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G50670.1 | 1e-40 | SBP family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|