PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D01G1446
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 616aa    MW: 67762.3 Da    PI: 5.438
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D01G1446genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS455.33.8e-1392476061374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  lv++L++cAeav++++l+la+al++++  la +++ +m+++a+yf+eALa+r++r        + p++  +++ s++l++   f+e++P+lkf+h+ta
  Gh_D01G1446 247 LVHALMACAEAVQQNNLNLAEALVKQIGFLAISQAGAMRKVATYFAEALARRIYR--------FYPQNPLDHSFSDVLHM--HFYETCPYLKFAHFTA 334
                  689****************************************************........44555555557777777..4*************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  NqaIlea+eg++rvH+iDf+++qG+QWpaL+qaLa R +gpp +R+Tg+g+p++++++ l+e+g++La+fAe+++v+fe++ +va++l+dl+ ++L++
  Gh_D01G1446 335 NQAILEAFEGKKRVHVIDFSMNQGMQWPALMQALALRVGGPPAFRLTGIGPPSHDNSDHLQEVGWKLAQFAEKIHVEFEYRGFVANSLADLDASMLDL 432
                  ************************************************************************************************** PP

         GRAS 197 kp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  +p   Ea+aVn+v++lh+ll++++++++    v ++vk+++P++v++veqea+hn++ Fl+rf+e+l++ys+lfdsle ++   s++++++++++lg+
  Gh_D01G1446 433 RPseVEAVAVNSVFELHKLLARPGAIDK----VFSVVKQMKPELVTIVEQEANHNGPVFLDRFTESLHFYSTLFDSLEGSV---SSQDKVMSEVYLGK 523
                  **8889**************99999988....************************************************7...9999********** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +i+nvvaceg +r+erhe+l +Wr+rl++aGF+pv+l+++a kqa++ll+ ++ +dgy vee++g+l+lgW++rpL+++SaW+
  Gh_D01G1446 524 QICNVVACEGVDRIERHESLTQWRNRLSTAGFSPVHLGSNAFKQASMLLALFAgGDGYGVEENNGCLMLGWHNRPLITTSAWK 606
                  **********************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120411.6E-3641108IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011294.5E-3841114No hitNo description
PROSITE profilePS5098567.325221585IPR005202Transcription factor GRAS
PfamPF035141.3E-136247606IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0042176Biological Processregulation of protein catabolic process
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MKRDHNHLQP NPDPSSLRGA PSTGKAKVWD EESAQQDCGM DELLAVLGYK VKTSDMAEVA  60
QKLEQLEEVM CNVQDDGISH LASETVHYNP SDLSTWLESM LSELNPPSTF DPFGAAGTAA  120
AALDDSFLVP AESSTLTTLD FDNINRKHQK SGQQIFEEAS CSDYDLKAIP GKAIYSQNTQ  180
PQPQTHDSSS SSTPTNVKSE KRFKSTSGPP SPSDIFPPPP AAASYGIPTD STRPVVLVDS  240
QENGIRLVHA LMACAEAVQQ NNLNLAEALV KQIGFLAISQ AGAMRKVATY FAEALARRIY  300
RFYPQNPLDH SFSDVLHMHF YETCPYLKFA HFTANQAILE AFEGKKRVHV IDFSMNQGMQ  360
WPALMQALAL RVGGPPAFRL TGIGPPSHDN SDHLQEVGWK LAQFAEKIHV EFEYRGFVAN  420
SLADLDASML DLRPSEVEAV AVNSVFELHK LLARPGAIDK VFSVVKQMKP ELVTIVEQEA  480
NHNGPVFLDR FTESLHFYST LFDSLEGSVS SQDKVMSEVY LGKQICNVVA CEGVDRIERH  540
ESLTQWRNRL STAGFSPVHL GSNAFKQASM LLALFAGGDG YGVEENNGCL MLGWHNRPLI  600
TTSAWKLTNK TTAISQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-6824260513377Protein SCARECROW
5b3h_D4e-6824260513377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.26420.0boll| ovule| root| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00611ChIP-seqTransfer from AT2G01570Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ6439690.0DQ643969.1 Gossypium barbadense DELLA protein GAI (GAI) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016733838.10.0PREDICTED: DELLA protein GAIP-B-like
SwissprotQ6EI050.0GAIPB_CUCMA; DELLA protein GAIP-B
TrEMBLA0A1U8N7J60.0A0A1U8N7J6_GOSHI; DELLA protein GAIP-B-like
TrEMBLA0A2P5QE360.0A0A2P5QE36_GOSBA; Uncharacterized protein
STRINGGorai.002G177000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83728121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein