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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D01G1355 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Trihelix | ||||||||
Protein Properties | Length: 307aa MW: 35378.4 Da PI: 8.8779 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 62.5 | 1e-19 | 47 | 132 | 2 | 82 |
trihelix 2 WtkqevlaLiearremeerlrr......gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 Wt qe+l+Li+a+r ++er + +k + +W+++ ++++++g+ rs++qC++kw+nl ++ykk+++ ++++ s+s+s++p++ Gh_D01G1355 47 WTIQETLTLITAKRLDDERRAKpstsspSKPGELRWKWIENYCWDHGCFRSQNQCNDKWDNLLRDYKKVRQYQSSH-SQSQSSHPFL 132 **************77777775333333468899*****************************************9.5666678875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-4 | 39 | 111 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.387 | 39 | 109 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 5.3E-14 | 46 | 138 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MSNPLPPPPP PSTHHHQHQP LNIITPATTS ATTMTSAPNR EYRKGNWTIQ ETLTLITAKR 60 LDDERRAKPS TSSPSKPGEL RWKWIENYCW DHGCFRSQNQ CNDKWDNLLR DYKKVRQYQS 120 SHSQSQSSHP FLSYWSMERH QRKLHNLPTN MSPEVFEALN DVLQRKLNTQ QQPHLHQPSF 180 SQSPEQLPLK TDQNPPEVDA PVTVSEESDS SETESSENLD SKTKRKKVRK IGSSIMRSAS 240 VLAQTLKSCE ENKEKRHQQV MELEQRRLQI EETRNEVNRK GITDLVAAMT NLSGAIQSLI 300 ANHYDQT |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.19834 | 0.0 | boll| ovule |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016706699.1 | 0.0 | PREDICTED: trihelix transcription factor ASR3-like | ||||
TrEMBL | A0A1U8L0Y6 | 0.0 | A0A1U8L0Y6_GOSHI; trihelix transcription factor ASR3-like | ||||
TrEMBL | A0A2P5QTD5 | 0.0 | A0A2P5QTD5_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.002G169000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3493 | 26 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35640.1 | 8e-47 | Trihelix family protein |