PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

SBP

Protein Properties

Length: 280aa MW: 30060.4 Da PI: 9.3397

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D01G1229	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	135.9	1.2e-42	80	155	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC++dl++ak y++rhkvC +hska++v+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+ Gh_D01G1229 80 RCQVEGCKVDLTDAKAYYSRHKVCGMHSKAAKVIVAGLEQRFCQQCSRFHQLPEFDQRKRSCRRRLAGHNERRRKP 155 6*************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	8.0E-35	74	142	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.163	78	155	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.29E-40	79	159	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.4E-32	81	154	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MEMGSGSLTD SGGSSSNSST ESLNGLKFGQ KIYFEDTSAG GTGGGTTMGT PPKSGIGSSS 60 SSGSGKKARG GVVQGGQPPR CQVEGCKVDL TDAKAYYSRH KVCGMHSKAA KVIVAGLEQR 120 FCQQCSRFHQ LPEFDQRKRS CRRRLAGHNE RRRKPPPGSL LSSRYSRLSS SIIESSRGGS 180 FIMDFTSHPR LSRRDVWPTS TSSEHVPGNQ YTGTGWLHPH PWQNNSENPP PNLYRQELPG 240 GTAVPSGGIP PEECFTGVVD SNCALSLFCQ INHGAPEIRD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	4e-32	81	154	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	153	RKRSCRRRLAGHNERRRK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.10300	0.0	boll\| ovule

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269\|PubMed:16861571}.

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ622317	0.0	KJ622317.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL9) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012467002.1	0.0	PREDICTED: squamosa promoter-binding-like protein 9
Swissprot	A3C057	2e-55	SPL17_ORYSJ; Squamosa promoter-binding-like protein 17
TrEMBL	A0A088DJZ5	0.0	A0A088DJZ5_GOSHI; SQUAMOSA promoter binding-like transcription factor
STRING	Gorai.002G156700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2144	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	2e-41	squamosa promoter binding protein-like 9

Publications ? help Back to Top
Zhang X, et al. Genomic organization, differential expression, and functional analysis of the SPL gene family in Gossypium hirsutum. Mol. Genet. Genomics, 2015. 290(1): p. 115-26 [PMID:25159110]