PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D01G1080
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 254aa    MW: 28311.9 Da    PI: 8.1092
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D01G1080genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.94e-19105159256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ ++tk+q  +Le+ F+++ ++  ++++ LA+kl+L  rqV vWFqNrRa+ k
  Gh_D01G1080 105 RKKLRLTKHQSAILEDRFKEHTTLCPKQKQALAAKLDLRPRQVEVWFQNRRARTK 159
                  78889************************************************98 PP
2HD-ZIP_I/II117.48.1e-38105193189
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                  +kk+rl+k+q+++LE+ F+e+++L p++K++la +L+l+prqv+vWFqnrRARtk+kq+E+d+e Lk+++++l+een+rL+ke +eL++
  Gh_D01G1080 105 RKKLRLTKHQSAILEDRFKEHTTLCPKQKQALAAKLDLRPRQVEVWFQNRRARTKLKQTEVDCELLKKCCETLTEENKRLQKELQELKS 193
                  69*************************************************************************************84 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.131101161IPR001356Homeobox domain
SuperFamilySSF466895.56E-18101162IPR009057Homeodomain-like
SMARTSM003893.3E-15103165IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.6E-18104164IPR009057Homeodomain-like
PfamPF000461.5E-16105159IPR001356Homeobox domain
CDDcd000864.01E-16105162No hitNo description
PROSITE patternPS000270136159IPR017970Homeobox, conserved site
SMARTSM003402.4E-20161204IPR003106Leucine zipper, homeobox-associated
PfamPF021831.1E-9161193IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGFDDICSSG LGLGLGWNVK ENFSQSDHQQ KKKKSLVRDE HFFPSLTLGP SSDDDARKAH  60
GDDQQASSVT ALSSFSNSSV KKEGDVEFER VSSRVGDEDD EGCHRKKLRL TKHQSAILED  120
RFKEHTTLCP KQKQALAAKL DLRPRQVEVW FQNRRARTKL KQTEVDCELL KKCCETLTEE  180
NKRLQKELQE LKSWKLTASY CMQLPAAATL TMCPSCERVA NGGDGPPATT TSIPFTIGPK  240
SHFINSLSHP SAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153161RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016706764.10.0PREDICTED: homeobox-leucine zipper protein HAT22-like
SwissprotP466044e-72HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A1U8L1510.0A0A1U8L151_GOSHI; homeobox-leucine zipper protein HAT22-like
STRINGGorai.002G137300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16712886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.14e-72HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]