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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Gh_D01G1059 |
Common Name | HSF2 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
HSF |
Protein Properties |
Length: 334aa MW: 37513.4 Da PI: 8.3271 |
Description |
HSF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gh_D01G1059 | genome | NAU-NBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HSF_DNA-bind | 113.9 | 1.1e-35 | 25 | 117 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98
Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+ e+ weF+++ Fkkg k+ll++i+
Gh_D01G1059 25 FLTKTYQLVDDPTTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPER---------WEFANEFFKKGGKHLLCEIH 112
9****************************************************************999.........******************** PP
XXXXX CS
HSF_DNA-bind 99 rkkse 103
r+k++
Gh_D01G1059 113 RRKTA 117
**986 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0008356 | Biological Process | asymmetric cell division |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 334 aa
Download sequence Send
to blast |
MALMVDNCEG VLLSLEPHQA VPAPFLTKTY QLVDDPTTDH IVSWGEDDTT FVVWRPPEFA 60 RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP ERWEFANEFF KKGGKHLLCE IHRRKTAQPS 120 INHHYHPHIP HSALNAPSFF PFPSQVSISP TDMDDSPPLS SPRGATGGYG SSVTALSEDN 180 ERLRRSNSLL MSELTHMRKL YSDIIYFVQN HVKPVTPGNS YSPSLLLSGP PPAVNTNTSL 240 LQKPLNQFLG YYPKSPNPQF QGLNSPTATS QSSLTIVEEP SSNSCKTRLF GVPLQSKKRL 300 HPEYSTAANM ETSKARLVLE KDDLRLNLMP SSTC
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
2ldu_A | 1e-21 | 21 | 117 | 17 | 123 | Heat shock factor protein 1 |
5d5u_B | 1e-21 | 10 | 116 | 11 | 131 | Heat shock factor protein 1 |
5d5v_B | 1e-21 | 10 | 116 | 11 | 131 | Heat shock factor protein 1 |
5d5v_D | 1e-21 | 10 | 116 | 11 | 131 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ683910 | 0.0 | KJ683910.1 Gossypium hirsutum heat shock transcription factor (HSF2) mRNA, complete cds. |