PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D01G1010
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 438aa    MW: 49926.6 Da    PI: 7.4044
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D01G1010genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.62.6e-19731541197
                  HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                    ++rl +p kfa+++++k   + t+tl+ +sg  W+v+l+++   ++ ++ +GWk Fvk++ L ++Df++Fk++g s f   v +f
  Gh_D01G1010  73 DFLQRLEIPEKFAKNIKKK--LPETVTLKGPSGIIWDVRLTVDDD-DTLFFNGGWKTFVKDHSLVANDFLIFKYNGVSHF--DVLMF 154
                  55689********888755..888****************54443.4599************************998888..66655 PP
2B345.41.5e-14313393184
                  EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                  f  +++p +v+++  + +p   ++++   k   + +++l+  + r+W+ ++ y ++++   l++GW++Fv++n+L+e D++vF+ 
  Gh_D01G1010 313 FMIIMKPTHVGRRFYMAVPTAWVAKYlP-K--DNADVILRM-NKRTWKTRFYYHRSRDCGGLSGGWRNFVNDNNLEEHDVCVFQP 393
                  677899********************42.3..334676655.78*******8877776678**********************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.44E-2362155IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.77663157IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.4E-2365155IPR015300DNA-binding pseudobarrel domain
CDDcd100178.02E-2165155No hitNo description
SMARTSM010191.5E-1666157IPR003340B3 DNA binding domain
PfamPF023623.1E-1675151IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-19309408IPR015300DNA-binding pseudobarrel domain
CDDcd100172.54E-19313408No hitNo description
PROSITE profilePS5086311.984313411IPR003340B3 DNA binding domain
PfamPF023626.2E-13313394IPR003340B3 DNA binding domain
SMARTSM010194.2E-12313406IPR003340B3 DNA binding domain
SuperFamilySSF1019368.83E-19313402IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MGLWITATTA EQGSQRTVSV TRKIESFSSP YSTKCTISSQ QMEDTCKDCR DWEEEIFWTH  60
FQSVHFTQFL HGDFLQRLEI PEKFAKNIKK KLPETVTLKG PSGIIWDVRL TVDDDDTLFF  120
NGGWKTFVKD HSLVANDFLI FKYNGVSHFD VLMFDGKSLC EKASSYFVRK CMHTESDATH  180
QTKRKVNENS DEILHNSSQC GLESGPEKST NNDMDARPSR KPIKSAASKK KIRNLDNGTQ  240
SIHAKQSLVG KELPTFPGEV KVERLETEYE HTTMDGDSDV FGLWHTTGKR FVTQFEKTNV  300
ILKAQEALTN EGFMIIMKPT HVGRRFYMAV PTAWVAKYLP KDNADVILRM NKRTWKTRFY  360
YHRSRDCGGL SGGWRNFVND NNLEEHDVCV FQPANIGSKP MILDVNIFHV LQKAVPLSQA  420
DPLPSSPELI ASTPDMDS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.113030.0boll| ovule
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016708130.10.0PREDICTED: B3 domain-containing protein REM16-like
RefseqXP_016708132.10.0PREDICTED: B3 domain-containing protein REM16-like
TrEMBLA0A1U8L0I70.0A0A1U8L0I7_GOSHI; B3 domain-containing protein REM16-like
STRINGGorai.002G130300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104282335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-76B3 family protein