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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D01G0872 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Nin-like | ||||||||
Protein Properties | Length: 906aa MW: 100830 Da PI: 6.9632 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 93.8 | 1.2e-29 | 587 | 638 | 1 | 52 |
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l++l++yF++++kdAAk+Lgvc+T+LKriCRq+GIkRWP+Rkik++ Gh_D01G0872 587 AEKTITLQVLRQYFAGSLKDAAKSLGVCPTTLKRICRQHGIKRWPSRKIKKV 638 589***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.905 | 577 | 658 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.5E-26 | 590 | 638 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 7.57E-23 | 809 | 896 | No hit | No description |
SMART | SM00666 | 2.7E-27 | 810 | 893 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 26.338 | 810 | 893 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 4.0E-22 | 811 | 890 | No hit | No description |
Pfam | PF00564 | 4.6E-19 | 812 | 892 | IPR000270 | PB1 domain |
CDD | cd06407 | 6.68E-40 | 812 | 891 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 906 aa Download sequence Send to blast |
MDFDYMDELL LDGCWLETTQ GSDFLNPTLP FSNNFFDPAF TWPTSESNAG DLGGGLSHQG 60 ENQRSLLSGN SHWNEAQGES LVSPHFSQSH SLDSDCVTDG SEPNRRWWIG PRVNSGPATS 120 VMQRLIQALG YIKAFGKEKD VLVQLWLPVN RGGRRFLTTS EQPFSLDPNS QKLASYRNIS 180 VKYDFPAEED SKDIAGLPGR VFLSKVPEWT PDVRFFKRDE YPRVGHAQEH DVRGTFALPV 240 FEQGSGTCLG VIEVVMTTEK IKIQPELESV CKALEAVNLR SSITSRTQNI KAYSNCYQAA 300 LPEIKELLRC ACETHRLPLA QAWVPCIQQG KEGCRHSSEN YVHCVSTVDD ACCIADPSIQ 360 GFHEACSEHH LLKGQGVIGR AFMTNQPCFS TDITSFKKTE YPLAHHAMMF NLHAAVALRF 420 RSIHTGKADF VLEFFLPAHC RDPEGQRKML NSLSIIIQQV CCSLRVVTDK ELVEETDLAV 480 SEVVAPSDGL PIREESSKRQ CTNHHSKKLS GESSSCLTKV QKSSNTALVL EKEKPRPMLD 540 EKLPEVEQHQ QHISLQESVE CGDSTFNEIS FSSVTMGKTS EKRRSKAEKT ITLQVLRQYF 600 AGSLKDAAKS LGVCPTTLKR ICRQHGIKRW PSRKIKKVGH SLQKLQHVID SVQGASGAFH 660 ISNFYANFPE LASPKLLGNS ALSTSPLNDK PKQINIQPEG GDFLSQAALS NSPSSSCSQS 720 SSSSHSCSSG THRPSNFNMS GKEDHIIGDN SGDGELKRVK SDVELHASSQ EGPKLFPRSQ 780 SLRSLKEQLI CDNLQPISKN TSPIAHDLEA QRVKVTYGDE KIRLRMQSKW RFKDLLHEIA 840 RRFNIDDISR FDLKYLDDDS EWVLLTCDAD MVECIDVCGS SQGNTIKLSL RVSHHHLDQF 900 SGSTGS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00154 | DAP | Transfer from AT1G20640 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016708145.1 | 0.0 | PREDICTED: protein NLP4-like | ||||
Refseq | XP_016708146.1 | 0.0 | PREDICTED: protein NLP4-like | ||||
Swissprot | Q9LE38 | 0.0 | NLP4_ARATH; Protein NLP4 | ||||
TrEMBL | A0A1U8L0C6 | 0.0 | A0A1U8L0C6_GOSHI; protein NLP4-like | ||||
STRING | Gorai.002G115800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3461 | 26 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20640.2 | 0.0 | Nin-like family protein |