PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D01G0835
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 126aa    MW: 14553.6 Da    PI: 7.4996
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D01G0835genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM58.32.6e-181092170
          NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.............kvka.eekewyfFskrdkkyat 70
                 +ppGfrFhPt+eel+ +yL+kkv+ + +el +vi+evd++k+ PwdL+              k+ +  +++wy Fs+ ++++++
  Gh_D01G0835 10 VPPGFRFHPTEEELLYYYLRKKVSFEAIEL-DVIREVDLNKLVPWDLKGhysyitlryadkcKIGSgPQNDWYCFSHIATRTRN 92
                 69****************************.9***************945899999888866444434569****998877655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-17697IPR003441NAC domain
PROSITE profilePS5100517.34610126IPR003441NAC domain
PfamPF023651.8E-91187IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MATRNGQLSV PPGFRFHPTE EELLYYYLRK KVSFEAIELD VIREVDLNKL VPWDLKGHYS  60
YITLRYADKC KIGSGPQNDW YCFSHIATRT RNIQPELEQT GQPYLVFGRL QGETGLSTLA  120
TPRELG
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaf blades, developing flowers, embryo and callus. Weakly expressed in roots. {ECO:0000269|PubMed:10660065}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010096002.23e-38protein SOMBRERO
SwissprotQ5Z6B66e-35NAC76_ORYSJ; NAC domain-containing protein 76
TrEMBLA0A0D2R4392e-72A0A0D2R439_GOSRA; Uncharacterized protein (Fragment)
STRINGGorai.002G111200.11e-72(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79671340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.32e-36NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]