PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D01G0527
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 385aa    MW: 42675.4 Da    PI: 6.8936
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D01G0527genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.81.5e-16226323195
                  EEEE-..-HHHHT.T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
           B3   1 ffkvltpsdvlks.grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 
                  f+k+lt sdv ++ grlvlpk++ae++  +++ ++++ lt++d++g+ Wev ++y  + ++++yvl+ G k++    + ++gD+v+F+  +r ++++l
  Gh_D01G0527 226 FEKKLTASDVDTRnGRLVLPKRCAEAYfpKISGQQGIFLTVQDTKGNDWEVFYRYwsNTNGKMYVLE-GLKDYMIMMEWEAGDTVTFY--KReEDEKL 320
                  99********98879*************9555558999*****************544444458888.********************..44366655 PP

                  EEE CS
           B3  93 vvk 95 
                  +++
  Gh_D01G0527 321 FMG 323
                  554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-25219331IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-18223324IPR015300DNA-binding pseudobarrel domain
CDDcd100171.53E-20224326No hitNo description
SMARTSM010199.9E-13226327IPR003340B3 DNA binding domain
PfamPF023622.8E-13226323IPR003340B3 DNA binding domain
PROSITE profilePS508639.263227328IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MAAPTVFIGT CFHCQSQSDV FFSGWQLRDG SFALLCHPCG SAFVEGRFCE TFHPEASGWR  60
ECDSCNKGIH CGCIMAAHSY AILDFGGVKC LECCLNEALA LHRNSPTFSN PEEMQASDSH  120
PKASDDTEET VTGVDPIASP DSVALNASPD KIGTPTPGAV PAAETEGESS VNSPAGTKKS  180
RKKKGRKNRK DASKQHQIQA RYSPKTSPEE LREICRQAKS SLIPLFEKKL TASDVDTRNG  240
RLVLPKRCAE AYFPKISGQQ GIFLTVQDTK GNDWEVFYRY WSNTNGKMYV LEGLKDYMIM  300
MEWEAGDTVT FYKREEDEKL FMGFKKYQAP ESAQKASSLN LVLFIEGVGS SFLYMLSSVS  360
ELLLSRKMQV IGMNDKKTKA YILSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A3e-342033261123B3 domain-containing transcription repressor VAL1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012458860.10.0PREDICTED: B3 domain-containing protein Os07g0563300-like
RefseqXP_016702500.10.0PREDICTED: B3 domain-containing protein Os07g0563300-like
TrEMBLA0A1U8KJ640.0A0A1U8KJ64_GOSHI; B3 domain-containing protein Os07g0563300-like
STRINGGorai.002G075900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1811179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.16e-35HSI2-like 1