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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Gh_D01G0457 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
SBP |
| Protein Properties |
Length: 182aa MW: 20260.6 Da PI: 8.6934 |
| Description |
SBP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_D01G0457 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SBP | 138.6 | 1.8e-43 | 59 | 135 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
Cqve+C +dls ak+yhrrhkvCe+h+kapvv+v+g++qrfCqqCsrfhelsefDe+krsCr+rLa+hnerrrk++a
Gh_D01G0457 59 CQVEKCGVDLSVAKRYHRRHKVCEIHAKAPVVVVAGIRQRFCQQCSRFHELSEFDEAKRSCRSRLAGHNERRRKSSA 135
**************************************************************************976 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 182 aa
Download sequence Send
to blast |
MNKDFMAEDV DNDMEEEGGG EEEEEGAVYH GVQDDEKKKK ASGRRGSSGG VGGVLPPSCQ 60
VEKCGVDLSV AKRYHRRHKV CEIHAKAPVV VVAGIRQRFC QQCSRFHELS EFDEAKRSCR 120
SRLAGHNERR RKSSAESSAE GSSRKGTSPQ LKEGYCRQVD DQRARVPITI PGNSSFKRSH 180
IR
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Increases during floral transition and stay high thereafter. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:14573523}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in the rib meristem and inter-primordial tissue of the inflorescence apex. {ECO:0000269|PubMed:10524240}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Promotes both vegetative phase change and flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16914499}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040, ECO:0000305|PubMed:16914499}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JX614763 | 1e-167 | JX614763.1 Gossypium hirsutum clone NBRI_GE58393 microsatellite sequence. |
| Publications
? help Back to Top |
- Jorgensen SA,Preston JC
Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
Mol. Phylogenet. Evol., 2014. 73: p. 129-39
[PMID:24508602] - Hyun Y, et al.
Site-directed mutagenesis in Arabidopsis thaliana using dividing tissue-targeted RGEN of the CRISPR/Cas system to generate heritable null alleles.
Planta, 2015. 241(1): p. 271-84
[PMID:25269397] - Xu M, et al.
Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana.
PLoS Genet., 2016. 12(8): p. e1006263
[PMID:27541584] - Ioannidi E, et al.
Trichome patterning control involves TTG1 interaction with SPL transcription factors.
Plant Mol. Biol., 2016. 92(6): p. 675-687
[PMID:27631431] - Jung JH,Lee HJ,Ryu JY,Park CM
SPL3/4/5 Integrate Developmental Aging and Photoperiodic Signals into the FT-FD Module in Arabidopsis Flowering.
Mol Plant, 2016. 9(12): p. 1647-1659
[PMID:27815142]
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