 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Gh_D01G0447 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 177aa MW: 20854.3 Da PI: 8.467 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_D01G0447 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 55.2 | 1.2e-17 | 14 | 67 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
++ ++++eq++ Le+ F n+++ e + +LA++lg++ rqV +W+qN+Ra++k
Gh_D01G0447 14 NKKRLNQEQVRLLERSFSANKKLEPELKLQLANQLGVPPRQVAIWYQNKRARWK 67
566799***********************************************9 PP
|
| 2 | HD-ZIP_I/II | 108.7 | 4.2e-35 | 14 | 105 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
+k+rl++eqv+lLE+sF++++kLepe K +la++Lg+ prqva+W+qn+RAR+kt+ +E d+++L+ ++++ +e++rLek+v+ L+eel++
Gh_D01G0447 14 NKKRLNQEQVRLLERSFSANKKLEPELKLQLANQLGVPPRQVAIWYQNKRARWKTQSMELDCNTLQVKLENALSEKRRLEKDVKYLQEELRK 105
69**************************************************************************************9986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009637 | Biological Process | response to blue light |
| GO:0009646 | Biological Process | response to absence of light |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 177 aa
Download sequence Send
to blast |
MDFQSQRLYS PKYNKKRLNQ EQVRLLERSF SANKKLEPEL KLQLANQLGV PPRQVAIWYQ 60
NKRARWKTQS MELDCNTLQV KLENALSEKR RLEKDVKYLQ EELRKAQETM FAMNNNQRAN 120
HHHHQQQQDQ PLNYFVSCNS TGSSEEGGSS SFHEDHEVLQ IDELYACLIG GDRSTWS
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | JX616439 | 0.0 | JX616439.1 Gossypium hirsutum clone NBRI_GE61116 microsatellite sequence. |
