PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D01G0423

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 310aa MW: 35002.9 Da PI: 6.8651

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D01G0423	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.2	2.6e-11	180	225	5	50
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 kr +r NR +A+rsR RK+++i eLe+ v +L++e +aL ++ Gh_D01G0423 180 KRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVA 225 8999*********************************999987765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.1E-14	176	240	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.703	178	230	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.13E-11	180	234	No hit	No description
Pfam	PF00170	8.9E-10	180	225	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	9.5E-12	180	231	No hit	No description
CDD	cd14703	2.57E-22	181	231	No hit	No description
PROSITE pattern	PS00036	0	183	198	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MTQNWPSFPH QRLPTMANFI STTANTATMN ASHHHQPSWV DEFLDFSSAR RGAHRRSISD 60 SIAFLEQPLV EECRDSNTNH NNNAMITETN VFDRLDDEQL MSMFSDDVAI TMAAAPTLSS 120 SNPSTPTSDQ NSNNDEKPVP SLDLQQPKNE PGEVESSCKP EPQAAQPPST SNGDPIVDPK 180 RVKRILANRQ SAQRSRVRKL QYISELERSV TTLQTEVSAL SPRVAFLDHQ RLILNVDNSA 240 LKQRIAALAQ DKIFKDAHQE ALKKEIERLR QVYQQQQILK KMNSNNSNNH HAPPQQQPSQ 300 PQQTKKEEQL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.8203	0.0	boll\| ovule

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator. {ECO:0000269\|PubMed:17719007}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016727988.1	0.0	PREDICTED: basic leucine zipper 61-like
Swissprot	Q9M2K4	1e-101	BZP61_ARATH; Basic leucine zipper 61
TrEMBL	A0A1U8MR14	0.0	A0A1U8MR14_GOSHI; basic leucine zipper 61-like
STRING	Gorai.002G064900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1753	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58120.1	4e-93	bZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]