PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D01G0357

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

DBB

Protein Properties

Length: 296aa MW: 32168.7 Da PI: 5.1814

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D01G0357	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.4	5.1e-07	4	47	5	42
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ +e e++ C ++ lC C +++H H++vpl Gh_D01G0357 4 QCNVCEAAEAKVLCCADEAALCWACDEKIHAAnklaskHQRVPL 47 6****99*******************66899999999986 PP
2	zf-B_box	28.6	2.8e-09	52	94	1	37
zf-B_box 1 seerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 s+++kC+ ++e +fC +++ llC++C +++H H Gh_D01G0357 52 SQMPKCDICQEASGFFFCLQDRALLCRKCDVAIHTAnpyvssH 94 689*******9*******************555556556 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.665	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	1.36E-8	3	47	No hit	No description
SMART	SM00336	9.5E-11	4	47	IPR000315	B-box-type zinc finger
SMART	SM00336	4.7E-16	52	99	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.072	52	99	IPR000315	B-box-type zinc finger
Pfam	PF00643	6.9E-7	53	94	IPR000315	B-box-type zinc finger
CDD	cd00021	1.78E-8	55	99	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MRIQCNVCEA AEAKVLCCAD EAALCWACDE KIHAANKLAS KHQRVPLSSS SSQMPKCDIC 60 QEASGFFFCL QDRALLCRKC DVAIHTANPY VSSHQRFLLT GVKVGLETTD PGASSSDVKS 120 PSSEKTSETK TNSTSRRAAP MAFTGGYNEV LPSNLGDVNN ELTKVTYAGG STAGSIQSWQ 180 MDDIFGLTDF NQSYGYMDDG SSKADSGKRG DSDSSSILRS ADDEVDDDER LGQVPDSSWA 240 VPQLPSPPTA SGLYWPNDSR DQCDSVVFVP DICCSVMKNP FNSWRSGSNR KRRRHI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	289	293	RKRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269\|PubMed:18182030, ECO:0000269\|PubMed:18540109, ECO:0000269\|PubMed:18796637, ECO:0000269\|PubMed:21070414, ECO:0000269\|PubMed:21427283}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. {ECO:0000269\|PubMed:18182030}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012455155.1	0.0	PREDICTED: B-box zinc finger protein 22
Swissprot	Q9SYM2	1e-101	BBX22_ARATH; B-box zinc finger protein 22
TrEMBL	A0A0D2R0Q7	0.0	A0A0D2R0Q7_GOSRA; Uncharacterized protein
STRING	Gorai.002G047200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5606	28	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78600.1	7e-95	light-regulated zinc finger protein 1