PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D01G0194 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Trihelix | ||||||||
Protein Properties | Length: 363aa MW: 39691.2 Da PI: 5.2403 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 91.3 | 9.9e-29 | 50 | 144 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rWt+qe+l+Li+++r e+r+rrg+ + +p+W++vs++++++g++r+p+qC+++w+nl++++kkike+e++ ++es+s +++ ++l+ Gh_D01G0194 50 RWTRQEILVLIQGKRVAENRVRRGRaaglafgsgQVEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWENNIREESESFWVMRNDLR 144 8**********************97778888888***************************************************99*9999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 4.4E-12 | 50 | 140 | No hit | No description |
PROSITE profile | PS50090 | 6.4 | 50 | 116 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 9.0E-5 | 50 | 115 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MASEQLSLAA TPDPIDGRKD AVNAAINGVE SRPVSVDCGD DVSKAPRLPR WTRQEILVLI 60 QGKRVAENRV RRGRAAGLAF GSGQVEPKWA SVSSYCKRHG VNRGPVQCRK RWSNLAGDFK 120 KIKEWENNIR EESESFWVMR NDLRRERKLP GFFDKEVYDI LDGAAAVSSA VEIPDSVVAP 180 ALALALTPTP AVQDTAEDNE AVFDSGRSAA AEDGLFSDFE QDDGAGSPEK VELPVSADAG 240 KSVPAPIPIS EQQYQQQPAI PGSKSQGTTK EKHPTSNPEV GSASQEARKR KRTETNGDEE 300 PDNSPQYRLI DVLEKNGKML VAQLEAQNTN FQQERQQRKD HADSLVAVLN KLADALGRIA 360 DKL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.2877 | 0.0 | boll| ovule| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016720751.1 | 0.0 | PREDICTED: trihelix transcription factor ASR3-like | ||||
Swissprot | Q8VZ20 | 1e-118 | ASR3_ARATH; Trihelix transcription factor ASR3 | ||||
TrEMBL | A0A1W5GZD7 | 0.0 | A0A1W5GZD7_GOSHI; Trihelix transcription factor (Fragment) | ||||
STRING | Gorai.002G021600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6557 | 28 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 1e-118 | Trihelix family protein |
Publications ? help Back to Top | |||
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