PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D01G0180
Common NameZFP1
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 339aa    MW: 38396 Da    PI: 7.6677
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D01G0180genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.24.4e-11112135326
                  S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                    +C++f+r+G C++Gd C FaHg
  Gh_D01G0180 112 STICSDFRRGGGCPRGDDCEFAHG 135
                  569********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.75E-7108139IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-6109136IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.314109137IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-8110137IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-9112135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4142173IPR000571Zinc finger, CCCH-type
SMARTSM003562.6145168IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.052145169IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MTTVYDPSHH LTSKKLCFKD LEIPPRKKQL HCCHNAAAME LPHHEARLHK YLPSNEDDDG  60
TDDPYGTDHF RMYEFKVRRC TRSRSHDWTD CPFAHPGEKA RRRDPTRYQY SSTICSDFRR  120
GGGCPRGDDC EFAHGVFECW LHPTRYRTEA CKDGKNCKRK VCFFAHSSRE LRLLPESQPP  180
YKNSDKNYNH CCLFCRSVTS SSSLSPTSTL LGLSHFSRSP SLSPPLSPLK HQQRTPRYGG  240
DRISKFGTEM TSSYDDVLLK EVMSYLGTMN LSEVSSPMAT TANTNIPWFD VSFKGAPSMV  300
SPSGSGEYFN GGGDDEKNNG NGVVLDHDLD LGWVNELLM
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO604605110.0
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8878950.0AY887895.1 Gossypium hirsutum putative CCCH-type zinc finger transcription factor (ZFP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001314290.10.0zinc finger CCCH domain-containing protein 2-like
TrEMBLA0A1U8M5520.0A0A1U8M552_GOSHI; zinc finger CCCH domain-containing protein 2-like
STRINGGorai.002G020100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29872766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.11e-57C3H family protein