PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G2297
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 303aa    MW: 34660.5 Da    PI: 6.5402
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G2297genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00034161185123
                  EEETTTTEEESSHHHHHHHHHH..T CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                  + C+ C+k ++  +++++H+++  H
  Gh_A13G2297 161 FYCELCNKQYKLAMEFEVHLSSydH 185
                  79*****************987555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004438.5E-1764109IPR000467G-patch domain
PROSITE profilePS5017416.47766111IPR000467G-patch domain
PfamPF015851.7E-1567107IPR000467G-patch domain
PfamPF121712.0E-5161188IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280163185IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MDYRRYNSSQ EANLGTKQQI SEEQAYQDSL VEELAEDFRL PINHKPTENV DLDNVQQATL  60
DTKLNSSNVG FRLLQKMGWK GKGLGKDEQG IIEPIRSGIR DPKLGIGKQE EDDFFTAEEN  120
IQRRKLDIEV EETEEHAKKR EVLAEREQKI QTEVKEIRKV FYCELCNKQY KLAMEFEVHL  180
SSYDHNHRKR FKEMREMHGS SSRDDRQKRE QQRQEREMAK FAQMAGARKQ QQQESREESG  240
PATTPAPAPA SAIATALADQ EQRKTLKFGF SSKSSSSKNA SGSAVKKPKV AVASVFGNDS  300
DDE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.20120.0boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016674000.10.0PREDICTED: G patch domain-containing protein 8-like
TrEMBLA0A1U8I6Z30.0A0A1U8I6Z3_GOSHI; G patch domain-containing protein 8-like
STRINGEOY117720.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1266756