PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G1886
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 475aa    MW: 53090 Da    PI: 6.2027
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G1886genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4562.4e-139474701374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lLl+cA++v++g+le+a+ +L+++selaspdgd+mqR+aayf eALa r+++++++l ka+++++   + +se++ +++lf+ev+P+lk ++l+ 
  Gh_A13G1886  47 LIHLLLTCANHVATGSLENANIALEQISELASPDGDTMQRIAAYFSEALADRILKTWPGLHKAINSTRVV-DLVSEQALVRRLFFEVFPFLKAAFLLV 143
                  689*************************************************************999886.679999********************* PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  NqaI ea+ege+ vH+iD+d+ +++QW+aL++ L++Rpegpp+lRiTg++     +ke l ++g+rL++ Ae+l++pf+fn+ v+ +ledl++e+L+v
  Gh_A13G1886 144 NQAIIEAMEGEKVVHVIDLDAAEPMQWIALIRGLSARPEGPPHLRITGIHV----RKEVLDQMGHRLSEEAEKLDIPFQFNP-VVGDLEDLDVERLHV 236
                  ***************************************************....9**************************.7999*********** PP

         GRAS 197 kpgEalaVnlvlqlhrll..........................................................desvsleserdevLklvkslsP 236
                  k+gEa+a+++vl+lh+ll                                                          +++vs   + d++L ++++l P
  Gh_A13G1886 237 KTGEAVAISSVLRLHSLLayddeplrkklplalknsngihlqralqmsqntlgellekdtvngcspspdsaswsplSSPVSP--KVDTFLTALRGLLP 332
                  **********************************************************************998754333333..57************ PP

         GRAS 237 kvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334
                  k+vv++eq+++hn+++++er+le+l+ y+alfd+le++++r+s+er k+E++l+g+ei+n+++cegaer+erhe+lekW +rl++aGF +vpls++ +
  Gh_A13G1886 333 KLVVITEQDSNHNGSTLMERLLESLHSYAALFDCLESTVSRASSERLKLEKMLFGNEIKNIISCEGAERKERHEKLEKWIQRLDSAGFCNVPLSYYGM 430
                  ************************************************************************************************** PP

         GRAS 335 kqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   qak+ll+ ++ dgy++++e+g+++ +W+drp++svSaWr
  Gh_A13G1886 431 LQAKTLLQGYNCDGYKMKDENGCVMVCWQDRPMFSVSAWR 470
                  ***************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.38421450IPR005202Transcription factor GRAS
PfamPF035148.2E-13747470IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MSQNESSSLK SSSSSLQVFS MMSLSPRLGS SYPWLKELKS EERGLYLIHL LLTCANHVAT  60
GSLENANIAL EQISELASPD GDTMQRIAAY FSEALADRIL KTWPGLHKAI NSTRVVDLVS  120
EQALVRRLFF EVFPFLKAAF LLVNQAIIEA MEGEKVVHVI DLDAAEPMQW IALIRGLSAR  180
PEGPPHLRIT GIHVRKEVLD QMGHRLSEEA EKLDIPFQFN PVVGDLEDLD VERLHVKTGE  240
AVAISSVLRL HSLLAYDDEP LRKKLPLALK NSNGIHLQRA LQMSQNTLGE LLEKDTVNGC  300
SPSPDSASWS PLSSPVSPKV DTFLTALRGL LPKLVVITEQ DSNHNGSTLM ERLLESLHSY  360
AALFDCLEST VSRASSERLK LEKMLFGNEI KNIISCEGAE RKERHEKLEK WIQRLDSAGF  420
CNVPLSYYGM LQAKTLLQGY NCDGYKMKDE NGCVMVCWQD RPMFSVSAWR CRNSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-43354737382Protein SCARECROW
5b3h_A6e-43354736381Protein SCARECROW
5b3h_D6e-43354736381Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6151531e-148JX615153.1 Gossypium hirsutum clone NBRI_GE58996 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016728266.10.0PREDICTED: scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A1U8MN500.0A0A1U8MN50_GOSHI; scarecrow-like protein 3
STRINGGorai.013G252600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40982759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]