PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Gh_A13G1806

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

CPP

Protein Properties

Length: 931aa MW: 101241 Da PI: 5.7723

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A13G1806	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	47.5	3.6e-15	522	560	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnCkkskC+k+YC+Cfaag +C+e C+C++C+N+ e Gh_A13G1806 522 CKRCNCKKSKCVKLYCDCFAAGIYCAEPCSCQGCFNRPE 560 89**********************************876 PP
2	TCR	47.8	2.8e-15	608	646	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCk+s ClkkYCeC++a++ Cs C+Ce+CkN Gh_A13G1806 608 RHKRGCNCKRSMCLKKYCECYQANVGCSIGCRCEGCKNV 646 589***********************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	1.0E-16	520	561	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	34.864	521	648	IPR005172	CRC domain
Pfam	PF03638	4.1E-11	523	558	IPR005172	CRC domain
SMART	SM01114	3.8E-17	608	649	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	5.2E-11	610	645	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 931 aa Download sequence Send to blast
MDSPEPTKSP IPSSAAPSSS FSPVQESPFS NFVSNLSPIK HDKVPHVAPR FLGLSSPPLV 60 FTSPRINTLK RPQSSNVEVS QNVKGDEQST NRSGDLERSV SELHREMIVD IKEDDTKDSM 120 SVQPSSSSGC VDEYLADPVE ADCVDSAYSV NLNLKQSNNV PESSANGLPC SKNLESVDKH 180 YSGREADAVQ LLSRQSEKGL ETFDIEPLRI KEDQHGGQGI SDGCQQIDSD MFDLSSQEQG 240 SKNLNPQKGV EDDGYGCDGF LQLQPGSLQM VQAYEGFAEN VGGVTDAPFY DTTHDLEAIE 300 HLRGMSRRCL QFGEPQPEST ANCSGSSNLV NDVITSVPLA TSSKTESLGS SHVDSSTSRK 360 RRLVNLSQLA VNMIPQSYDN RSSLTVSKPS GIGLHLNSIF NAIPTDQGGT VSMKLAVDTM 420 GTEGIKSASI TSCQSMENME NCSDAFEKVS TAPQDRTLEA KVSTIEGSAA SESLCTMESI 480 ECHMTVNKKR KLSSGDGDIN EVFNQQSPKN KRKKLSDSDE GCKRCNCKKS KCVKLYCDCF 540 AAGIYCAEPC SCQGCFNRPE YESTVLETRQ QIESRNPLAF APKIVQPVTE VPVNSREDGN 600 WKTPSSARHK RGCNCKRSMC LKKYCECYQA NVGCSIGCRC EGCKNVYGKK EDYYVTEAIV 660 KRGVGELSES TVAAKKDFLH SELCNPHYLT PTTPSFEHSD PGKNASASGL LPMRCLPSPE 720 SDPTNVSLAK SPRTSNTNDM LLETSKENLY VGSHRDKINY NNADNILADD CHQTPLPNHP 780 SIIIDSSSSK PRELTNLSRL NLGPRSGCFT LGGSLRWRSS PITPKSPIDK ELQQLDSDGG 840 LYDILEDDTP EMLKDTSTPL KSVKASSPNG KRVSPPHKLH QLGSSSSGSL RSGRKFMLKA 900 VPSFPPLTPC IVSKGNSNES RSNYEEDGSK D

Sequence ? help Back to Top

Protein Sequence Length: 931 aa Download sequence Send to blast

MDSPEPTKSP IPSSAAPSSS FSPVQESPFS NFVSNLSPIK HDKVPHVAPR FLGLSSPPLV  60
FTSPRINTLK RPQSSNVEVS QNVKGDEQST NRSGDLERSV SELHREMIVD IKEDDTKDSM  120
SVQPSSSSGC VDEYLADPVE ADCVDSAYSV NLNLKQSNNV PESSANGLPC SKNLESVDKH  180
YSGREADAVQ LLSRQSEKGL ETFDIEPLRI KEDQHGGQGI SDGCQQIDSD MFDLSSQEQG  240
SKNLNPQKGV EDDGYGCDGF LQLQPGSLQM VQAYEGFAEN VGGVTDAPFY DTTHDLEAIE  300
HLRGMSRRCL QFGEPQPEST ANCSGSSNLV NDVITSVPLA TSSKTESLGS SHVDSSTSRK  360
RRLVNLSQLA VNMIPQSYDN RSSLTVSKPS GIGLHLNSIF NAIPTDQGGT VSMKLAVDTM  420
GTEGIKSASI TSCQSMENME NCSDAFEKVS TAPQDRTLEA KVSTIEGSAA SESLCTMESI  480
ECHMTVNKKR KLSSGDGDIN EVFNQQSPKN KRKKLSDSDE GCKRCNCKKS KCVKLYCDCF  540
AAGIYCAEPC SCQGCFNRPE YESTVLETRQ QIESRNPLAF APKIVQPVTE VPVNSREDGN  600
WKTPSSARHK RGCNCKRSMC LKKYCECYQA NVGCSIGCRC EGCKNVYGKK EDYYVTEAIV  660
KRGVGELSES TVAAKKDFLH SELCNPHYLT PTTPSFEHSD PGKNASASGL LPMRCLPSPE  720
SDPTNVSLAK SPRTSNTNDM LLETSKENLY VGSHRDKINY NNADNILADD CHQTPLPNHP  780
SIIIDSSSSK PRELTNLSRL NLGPRSGCFT LGGSLRWRSS PITPKSPIDK ELQQLDSDGG  840
LYDILEDDTP EMLKDTSTPL KSVKASSPNG KRVSPPHKLH QLGSSSSGSL RSGRKFMLKA  900
VPSFPPLTPC IVSKGNSNES RSNYEEDGSK D

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	2e-17	525	646	14	121	Protein lin-54 homolog
5fd3_B	2e-17	525	646	14	121	Protein lin-54 homolog
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016727338.1	0.0	PREDICTED: protein tesmin/TSO1-like CXC 4
TrEMBL	A0A1U8MP91	0.0	A0A1U8MP91_GOSHI; protein tesmin/TSO1-like CXC 4
STRING	Gorai.013G241500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15196	10	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	4e-62	TESMIN/TSO1-like CXC 2