PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G1401
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 313aa    MW: 34875.1 Da    PI: 8.1588
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G1401genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.87.7e-1669114147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l ++v+ +G+ +W++Ia+++  gR++k+c++rw++ 
      Gh_A13G1401  69 RGHWRPAEDAKLMELVTYYGPQNWNLIAEHLE-GRSGKSCRLRWFNQ 114
                      899*****************************.***********996 PP
2Myb_DNA-binding52.51.2e-16122163245
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       ++T+eE+e l+ a++++G++ W++Iar +  gRt++ +k++w+
      Gh_A13G1401 122 RNFTEEEEEMLLVAHRLHGNK-WARIARLFD-GRTDNAVKNHWH 163
                      68*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.8264115IPR017930Myb domain
SMARTSM007171.3E-1168117IPR001005SANT/Myb domain
PfamPF002497.6E-1569114IPR001005SANT/Myb domain
SuperFamilySSF466898.79E-2869162IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-2670122IPR009057Homeodomain-like
CDDcd001671.06E-1072113No hitNo description
PROSITE profilePS5129424.053116170IPR017930Myb domain
SMARTSM007176.8E-14120168IPR001005SANT/Myb domain
PfamPF002493.8E-14122163IPR001005SANT/Myb domain
CDDcd001675.62E-11123163No hitNo description
Gene3DG3DSA:1.10.10.604.2E-20123169IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MEQSNKCLSF EPLENRETMR TAGCDGKNEI WGVEEKGLTL NLDGEEDESN KNSSTVSGCK  60
SGNTKLCSRG HWRPAEDAKL MELVTYYGPQ NWNLIAEHLE GRSGKSCRLR WFNQLDPRIN  120
KRNFTEEEEE MLLVAHRLHG NKWARIARLF DGRTDNAVKN HWHVITARKH REKSGVYKRK  180
KPPSYACRAL PKGLGLTIVN SACSASDQST ISSNIDQSAK VSSPVHQMDV SRRCSLFENV  240
ATRGIGYVVY QQGLMEAVMS VNRSATSLDS NSEVSAAESL GTNWTSHFIS GESCGNGNEK  300
IPFIDFLGVG RAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-33691697107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167181RKHREKSGVYKRKKP
2168180KHREKSGVYKRKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0527260.0KM052726.1 Gossypium hirsutum LOF-like transcription factor LOF2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017618737.10.0PREDICTED: myb-related protein 3R-1
TrEMBLA0A1U8ICL90.0A0A1U8ICL9_GOSHI; transcriptional activator Myb-like
STRINGGorai.013G196500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12102896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-67myb domain protein 105