PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A13G1365 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GRF | ||||||||
Protein Properties | Length: 334aa MW: 36420.3 Da PI: 8.334 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.5 | 6.5e-25 | 92 | 136 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+ Gh_A13G1365 92 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVES 136 79****************************************986 PP | |||||||
2 | QLQ | 64.3 | 3.1e-22 | 30 | 66 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s+FT +Q+q+L++Q+l++Ky++a++PvPp+L+++iqk Gh_A13G1365 30 SPFTVSQWQELEHQALIFKYMMAGLPVPPDLVLPIQK 66 89*********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.1E-12 | 30 | 66 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 3.8E-16 | 31 | 65 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 24.498 | 31 | 66 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.762 | 92 | 136 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.9E-21 | 93 | 135 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MNSGGGGGGG GAESGGVGMV AMRSSSSSSS PFTVSQWQEL EHQALIFKYM MAGLPVPPDL 60 VLPIQKSFES ISHRFFHHPT MGYCSFYGKK VDPEPGRCRR TDGKKWRCSK DAYPDSKYCE 120 RHMHRGRNRS RKPVESQTMA QSLSTVTSLT VSGSTTGGGG TGTASFQSLP LHAFGGTQVT 180 ALATGQSNYH VESIPYGIPR KDYRSQGIKP DAGGHSFISE ALGSNRDTWP LMQSRVSSFP 240 QSKSDGNPIL LNDYPQLSFF SDFNSGETVK HEGQSLRPFF DEWPKTRDTW SALEDDRSNQ 300 TSFSTTQLSI SIPMASSDFS TTSSHSPHGE FQTP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.7107 | 0.0 | boll| ovule |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FQ382488 | 3e-46 | FQ382488.1 Vitis vinifera clone SS0ABG55YD19. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017620202.1 | 0.0 | PREDICTED: growth-regulating factor 4-like | ||||
Swissprot | Q6AWY6 | 3e-87 | GRF3_ORYSJ; Growth-regulating factor 3 | ||||
TrEMBL | A0A0B0NLB0 | 0.0 | A0A0B0NLB0_GOSAR; Dna double-strand break repair rad50 atpase | ||||
STRING | Gorai.013G184200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14339 | 10 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 2e-45 | growth-regulating factor 5 |