PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A13G1206

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 461aa MW: 52068.6 Da PI: 7.8055

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A13G1206	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	424.3	9.9e-130	88	457	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lL++cA+a+ ++++ + ++l+a+ ++ +s +g+p+qRl ay++e+L ar s+s++y+al+++e + +e l+++++++e++P+lkf++++a Gh_A13G1206 88 LRQLLFACAKALFENKMDEFDELIAKAKDAVSIAGEPIQRLGAYMVEGLVARKEASGSNIYRALRCREPE---GKELLSYMHMLYEICPYLKFGYMAA 182 689****************************************************************9...9******************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 N aI ea +e+++HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+ + le++g+rL+ + e++++p+ef+ v d++ ++L Gh_A13G1206 183 NGAIAEACRNEDHIHIIDFQIAQGTQWVTLLQALAARPGGAPRVRITGIDDPVSKyaRGGGLEAVGRRLSALSEKFNIPVEFHG-VPVFAPDVTRDML 279 ************************************************99999999********************.688899*** PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 +++pgEalaVn+ lqlh+++desv+++++rd +L+lvkslsPkv ++veqe+++n+++Fl rf+e+leyy a+f+s++++lpr+ +eri+vE+++l+r Gh_A13G1206 280 NLRPGEALAVNFPLQLHHTPDESVDVNNPRDGILRLVKSLSPKVTTLVEQESNTNTAPFLPRFIETLEYYLAIFESIDETLPRDRKERINVEQQCLAR 377 ********************************************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +ivn++aceg+er+erhe l+kW++rl++aGF+++pls+++++ +++llr ++ + y++ e++g+++l Wkdr+L+s+SaW Gh_A13G1206 378 DIVNIIACEGKERVERHELLGKWKSRLTMAGFRQYPLSSYVNSVIRSLLRCYS-KHYTLVEKDGAMLLRWKDRNLISASAW 457 **********************************************999.55*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.767	62	439	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.4E-127	88	457	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence Send to blast
MIYTSQELDS ALWAPDRDKE VTTPSVSRPR ETGPLSRTWS RESQGSLVLQ PQTFFVSRHR 60 QSAEAVHVEK RQKAIEDLSL HGIPPGNLRQ LLFACAKALF ENKMDEFDEL IAKAKDAVSI 120 AGEPIQRLGA YMVEGLVARK EASGSNIYRA LRCREPEGKE LLSYMHMLYE ICPYLKFGYM 180 AANGAIAEAC RNEDHIHIID FQIAQGTQWV TLLQALAARP GGAPRVRITG IDDPVSKYAR 240 GGGLEAVGRR LSALSEKFNI PVEFHGVPVF APDVTRDMLN LRPGEALAVN FPLQLHHTPD 300 ESVDVNNPRD GILRLVKSLS PKVTTLVEQE SNTNTAPFLP RFIETLEYYL AIFESIDETL 360 PRDRKERINV EQQCLARDIV NIIACEGKER VERHELLGKW KSRLTMAGFR QYPLSSYVNS 420 VIRSLLRCYS KHYTLVEKDG AMLLRWKDRN LISASAWHCN N

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence Send to blast

MIYTSQELDS ALWAPDRDKE VTTPSVSRPR ETGPLSRTWS RESQGSLVLQ PQTFFVSRHR  60
QSAEAVHVEK RQKAIEDLSL HGIPPGNLRQ LLFACAKALF ENKMDEFDEL IAKAKDAVSI  120
AGEPIQRLGA YMVEGLVARK EASGSNIYRA LRCREPEGKE LLSYMHMLYE ICPYLKFGYM  180
AANGAIAEAC RNEDHIHIID FQIAQGTQWV TLLQALAARP GGAPRVRITG IDDPVSKYAR  240
GGGLEAVGRR LSALSEKFNI PVEFHGVPVF APDVTRDMLN LRPGEALAVN FPLQLHHTPD  300
ESVDVNNPRD GILRLVKSLS PKVTTLVEQE SNTNTAPFLP RFIETLEYYL AIFESIDETL  360
PRDRKERINV EQQCLARDIV NIIACEGKER VERHELLGKW KSRLTMAGFR QYPLSSYVNS  420
VIRSLLRCYS KHYTLVEKDG AMLLRWKDRN LISASAWHCN N

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	8e-62	90	458	6	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.3298	1e-116	ovule

Functional Description ? help Back to Top
Source	Description
UniProt	May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269\|PubMed:12591613}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269\|PubMed:12591613}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016675957.1	0.0	PREDICTED: scarecrow-like protein 21
Swissprot	Q69VG1	0.0	CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBL	A0A1U8ICZ5	0.0	A0A1U8ICZ5_GOSHI; scarecrow-like protein 21
STRING	Gorai.013G164700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14538	10	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50600.1	1e-180	scarecrow-like 5

Publications ? help Back to Top
Day RB, et al. Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells. Plant Mol. Biol., 2004. 54(2): p. 261-72 [PMID:15159627]