PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_A13G1044 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 246aa MW: 28813.6 Da PI: 4.9001 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.5 | 1.7e-14 | 9 | 56 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W+ +Ed++l+ +++++G +W+ ++ g+ R++k+c++rw +yl Gh_A13G1044 9 KGTWSHDEDQKLIAYIRKYGIWNWNEMPKFAGLQRSGKSCRLRWMNYL 56 799*****************99************************97 PP | |||||||
2 | Myb_DNA-binding | 49.3 | 1.1e-15 | 62 | 105 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++ eE+e ++++ k lG++ W++Ia++++ Rt++++k++w++ Gh_A13G1044 62 RGNFSREEEETIIHLQKTLGNR-WSAIAARLP-QRTDNDIKNYWNT 105 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.757 | 4 | 56 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.24E-28 | 7 | 103 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.7E-11 | 8 | 58 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.1E-13 | 9 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.6E-22 | 10 | 63 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.08E-9 | 11 | 56 | No hit | No description |
PROSITE profile | PS51294 | 23.677 | 57 | 111 | IPR017930 | Myb domain |
SMART | SM00717 | 2.5E-14 | 61 | 109 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-14 | 62 | 105 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.17E-9 | 64 | 107 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-24 | 64 | 111 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 246 aa Download sequence Send to blast |
MVRQPYLKKG TWSHDEDQKL IAYIRKYGIW NWNEMPKFAG LQRSGKSCRL RWMNYLRPKI 60 RRGNFSREEE ETIIHLQKTL GNRWSAIAAR LPQRTDNDIK NYWNTRLKKR VIVEKKNSSS 120 ATTETKSSME ENSSDADSSM MVDILLDYQI PTMDSFPELA ADNTISLSDC DISVAVDDHY 180 SMAMDNNLVS SENYWEIENL WGQLLTMEGL DCEVMSPNSQ LWLHELIYVC DSYYDPVVDL 240 WINPFI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-27 | 5 | 111 | 3 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JX589571 | 1e-63 | JX589571.1 Gossypium hirsutum clone NBRI_GE24298 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016675463.1 | 0.0 | PREDICTED: transcription factor MYB23-like | ||||
TrEMBL | A0A1U8IGH8 | 0.0 | A0A1U8IGH8_GOSHI; transcription factor MYB23-like | ||||
STRING | Gorai.013G143200.1 | 1e-174 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17382 | 4 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G31180.1 | 2e-50 | myb domain protein 14 |