PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G0857
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CPP
Protein Properties Length: 693aa    MW: 76343.9 Da    PI: 6.7818
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G0857genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.21e-15409446340
          TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                  +k+CnCk+skClk+YC+Cfaag +C e C+C+dC+Nk 
  Gh_A13G0857 409 CKRCNCKRSKCLKLYCDCFAAGLYCIEPCSCQDCFNKP 446
                  79**********************************96 PP
2TCR52.31.1e-16493532140
          TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                  ++k+gCnCk+s+ClkkYCeCf+ag+ Cs +C+Ce+CkN+ 
  Gh_A13G0857 493 RHKRGCNCKRSSCLKKYCECFQAGVGCSLSCRCEGCKNSF 532
                  589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.2E-17407448IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.47408533IPR005172CRC domain
PfamPF036384.8E-11410445IPR005172CRC domain
SMARTSM011141.2E-17493534IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.1E-12495531IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MDTPDKTQIT PTSNLSKFED SPVFKYIDSL SPIELAKSRQ TDNGFSSLAF LSPSSLFPSP  60
QITCHRESRF SVKRHHFLEP LNSRVARSGH ESNTSEGASK VDEHLGCLNN DSSSKETSSD  120
QLDKQPNLAT DLPRTLKYDC RSPDGDFEPC NEILKKTNVE VAGQERSPFQ CNRDKWEERQ  180
QSFQNERDLR KICGIKQSEE SAGPDWVAVL SDVADMLTMN SSIIHANTDG RDWRTTNSGT  240
TSFISNILQF PLDKANNSEN AEFGDPSGSC KQSESGEPVM DRMHGILSTC LPDELVVNDS  300
GLKKDDKEGN CNESNHQQFS IRRRCLVFEK SPGFGLHLNS LPNIPKGGQS PLSKSTLSST  360
NRGEVPDDNK GVVTENSYEM PATFGGNEAD HNSPEKKRHF EIVEESVACK RCNCKRSKCL  420
KLYCDCFAAG LYCIEPCSCQ DCFNKPIHEN VVLETRRQIE SRNPLAFAPK VIRTTNGVSD  480
SMGEINKTPA SARHKRGCNC KRSSCLKKYC ECFQAGVGCS LSCRCEGCKN SFGRKEGGCE  540
SESDGDNLEA CEKNASEKSS HDTVISNGQE HLDLSVPSPD ISRLPFAYSG KLAAFFPHSI  600
KSSPQLCGTQ EQGSSHTSSC KPKLESNLDG IPESGTPEIP KHKCFTLVSN PTSPNCKGVF  660
STPNHDSTSS STKWRSRKLI LRSVPSFPSF SPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A8e-2041053012120Protein lin-54 homolog
5fd3_B8e-2041053012120Protein lin-54 homolog
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818422e-33LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBankLN7132592e-33LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016674116.10.0PREDICTED: protein tesmin/TSO1-like CXC 3 isoform X1
TrEMBLA0A1U8I7C60.0A0A1U8I7C6_GOSHI; protein tesmin/TSO1-like CXC 3 isoform X1
STRINGGorai.013G121300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17096510
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.12e-86Tesmin/TSO1-like CXC domain-containing protein