PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G0777
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 727aa    MW: 79422.7 Da    PI: 5.7484
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G0777genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.85e-2056111156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  +++ +++t++q++e+e++F+++++p+ ++r+eL ++lgL+  qVk+WFqN+R+++k
  Gh_A13G0777  56 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELGRELGLEPLQVKFWFQNKRTQMK 111
                  688999***********************************************999 PP
2START213.95.7e-672394591206
                  HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
        START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                  ela +a++elv++a+ +ep+W++s       +n++e++++f+++ +     ++ ea+r +++v+m++ +lve+l+d++ qW++ +     ka+tl+v+
  Gh_A13G0777 239 ELAVAAMEELVRMAQMGEPLWMTSLdgttYVLNEEEYIRTFPRGIGpkptgFKCEASRGTALVIMNHINLVEILMDVN-QWSTVFSgivsKASTLDVL 335
                  57899********************9888889***********999********************************.******************* PP

                  CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSX CS
        START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrl 176
                  s+g      galq+m ae+q+lsplvp R++++vRy++q+ +g+w++vd S+d+ ++ p+    +R++++pSg+li++++ng+skvtwvehv+++++ 
  Gh_A13G0777 336 STGiagnynGALQVMAAEFQVLSPLVPtRESYYVRYCKQHAEGTWAVVDASLDNIRPSPT----ARCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDSG 429
                  *********************************************************996....********************************** PP

                  XHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 177 phwllrslvksglaegaktwvatlqrqcek 206
                  +h+l+++lv+sg+a+ga++w atl+rqce+
  Gh_A13G0777 430 VHSLYKQLVSSGHAFGAQRWIATLDRQCER 459
                  ****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.6E-2235111IPR009057Homeodomain-like
SuperFamilySSF466895.01E-1944113IPR009057Homeodomain-like
PROSITE profilePS5007116.68253113IPR001356Homeobox domain
SMARTSM003894.0E-1954117IPR001356Homeobox domain
CDDcd000861.46E-1856114No hitNo description
PfamPF000461.1E-1756111IPR001356Homeobox domain
PROSITE profilePS5084844.574230462IPR002913START domain
SuperFamilySSF559619.16E-35232461No hitNo description
CDDcd088754.55E-129234458No hitNo description
SMARTSM002341.4E-59239459IPR002913START domain
PfamPF018522.5E-56240459IPR002913START domain
Gene3DG3DSA:3.30.530.201.4E-5308440IPR023393START-like domain
SuperFamilySSF559614.18E-24479719No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    Send to blast
MFQQPSNMME GQLHPLESES EIGRMRDDEL DSTTKSGSEN HEAASGDDQN PRPNKKKRYH  60
RHTQHQIQEM EAFFKECPHP DDKQRKELGR ELGLEPLQVK FWFQNKRTQM KTQHERHENT  120
QLRTENEKLR ADNMRYREAL STASCPNCGG PTAVGQMSFD EHHLRLENAR LREEIDRISA  180
IAAKYVGKPV VSYPLLSSPM TPRPFEFGAQ PGTGDMYGAG DLLRSISSPS EADKPIIIEL  240
AVAAMEELVR MAQMGEPLWM TSLDGTTYVL NEEEYIRTFP RGIGPKPTGF KCEASRGTAL  300
VIMNHINLVE ILMDVNQWST VFSGIVSKAS TLDVLSTGIA GNYNGALQVM AAEFQVLSPL  360
VPTRESYYVR YCKQHAEGTW AVVDASLDNI RPSPTARCRR RPSGCLIQEM PNGYSKVTWV  420
EHVEVDDSGV HSLYKQLVSS GHAFGAQRWI ATLDRQCERL ASVMATNVPT GDVGVITNQD  480
GRKSMLKLAE RMVMSFCAGV SASTAHTWTT LSGTGADDVR VMTRKSVDDP GRPPGIVLSA  540
ATSFWLPVSP KRVFDFLRDE NSRSEWDILS NGGVVQEMAH IANGRDTGNC VSLLRVNSAN  600
SSQSNMLILQ ESCADPTASF VIYAPVDIVA MNVVLNGGDP DYVALLPSGF AILPDGSTIT  660
AATSSAGGGI DTDAAGSSGG SLLTVAFQIL VDSVPTAKLS LGSVATVNNL IACTVERIKA  720
SLSCENA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.248000.0boll| ovule
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hairless cell files of the hypocotyl epidermis. Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in primary root tips, in the L1 of apical inflorescence meristems, early flower primordia, carpel epidermis, ovule primordia, nucellus, chalaze and seed coat. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016732503.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like
RefseqXP_016732504.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like
RefseqXP_016732505.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A1U8N0C30.0A0A1U8N0C3_GOSHI; homeobox-leucine zipper protein HDG2-like
STRINGGorai.013G100200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49128149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2