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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A13G0648 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | TCP | ||||||||
Protein Properties | Length: 366aa MW: 39723.4 Da PI: 9.9322 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 126.2 | 3.5e-39 | 47 | 172 | 2 | 121 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.......... 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s++ Gh_A13G0648 47 PPKRTSTKDRHTKVEGRGRRIRMPATCAARVFQLTRELGLKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSAShlrntyfnpn 144 789******************************************************************99986666666666444444555554322 PP TCP 89 ............kaaksaakskksqksaasalnlakesrakarar 121 + ++n+ ++s+++++++ Gh_A13G0648 145 fttqqlrtrselD-----------------QRNVLDDSSQQQQQQ 172 2222222222220.................233333333222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.1E-39 | 51 | 172 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.087 | 53 | 107 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MIMDENGIRR PNFPLQLLEK KEQPRSDPAD VDTSSKPTLE PPSKKPPPKR TSTKDRHTKV 60 EGRGRRIRMP ATCAARVFQL TRELGLKSDG ETIEWLLQQA EPAVIAATGT GTIPANFTSL 120 NISLRSSGSS MSASHLRNTY FNPNFTTQQL RTRSELDQRN VLDDSSQQQQ QQQRRVLFPG 180 VALSSEDSLT FPGTSSTTLN AFLQAKQEIR DAKAADTSIG KRRRPEQQET PQNQVGSYLI 240 QSNTGSIPTS HNPIPATFWI GNQVISGSGT GDPMWTLPST NNTNMYRGTM SSGVHFMNLA 300 APMALLPAQQ FGLGIGAGGG SVTDTHSSMP ASLNAYRPVP GIVISEPPGG GSHQHHGGEN 360 RHDSTC |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.2412 | 0.0 | boll| ovule |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ527504 | 1e-125 | HQ527504.1 Gossypium herbaceum clone NBRI_C_EYT27PB01AVN7Y simple sequence repeat marker, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016674599.1 | 0.0 | PREDICTED: transcription factor TCP15-like | ||||
TrEMBL | A0A1U8IFH5 | 0.0 | A0A1U8IFH5_GOSHI; transcription factor TCP15-like | ||||
STRING | Gorai.N023400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3915 | 27 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69690.1 | 7e-39 | TCP family protein |