PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A13G0494

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 258aa MW: 29876.2 Da PI: 5.2654

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A13G0494	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.1	5.6e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd +l +++++G +W+ +++ g++R++k+c++rw +yl Gh_A13G0494 14 KGEWSAEEDHKLRSYIQRYGHWNWRELPKYAGLKRCGKSCRLRWMNYL 61 799***************99**********************97 PP
2	Myb_DNA-binding	58	2.2e-18	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEd l+++++ ++G++ W+tIa+ ++ gRt++++k++w+ + Gh_A13G0494 67 RGNFTEEEDALIIKLHDEMGNR-WSTIAKSFP-GRTDNEIKNHWHAH 111 89******************.*****.*********976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.818	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.01E-30	11	108	IPR009057	Homeodomain-like
SMART	SM00717	1.4E-10	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	8.7E-14	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-23	15	68	IPR009057	Homeodomain-like
CDD	cd00167	6.61E-8	16	61	No hit	No description
PROSITE profile	PS51294	28.238	62	116	IPR017930	Myb domain
SMART	SM00717	1.0E-17	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.2E-16	67	111	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.8E-27	69	115	IPR009057	Homeodomain-like
CDD	cd00167	1.94E-11	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MVRAPFYDKN GMKKGEWSAE EDHKLRSYIQ RYGHWNWREL PKYAGLKRCG KSCRLRWMNY 60 LRPELKRGNF TEEEDALIIK LHDEMGNRWS TIAKSFPGRT DNEIKNHWHA HLKKRTKRDE 120 KDKSDCWQSE AIRNENICEG EGERERESNS ILVDTPNNMI LESSPLSPAT STCTEQSSFS 180 SGSGSMFSFN VVGGLEDNCL PCSGTYEAES SGDFWSQPFV ADNTSSLEKG GFEMLLEYED 240 MYHNDSAYLL YELMQGWI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	3e-28	12	116	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016675596.1	0.0	PREDICTED: transcription factor WER-like
TrEMBL	A0A1U8IBK4	0.0	A0A1U8IBK4_GOSHI; transcription factor WER-like
STRING	Gorai.013G071600.1	1e-170	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17768	5	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31180.1	6e-54	myb domain protein 14