PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G0425
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 241aa    MW: 27732.4 Da    PI: 8.6507
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G0425genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.32.7e-25959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 k+ie +s rqvtfskRrng+lKKA+EL +LCdaev +iifsst kl+ ++s
  Gh_A13G0425  9 KKIEKSSSRQVTFSKRRNGLLKKAKELAILCDAEVGLIIFSSTAKLHHFAS 59
                 68**********************************************986 PP
2K-box82.87.5e-28841721199
        K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                  +++ + +++e+a L+++++ Lq+ +R+l+Ge+L+ Ls+k+L++Le+qL+ slk++R +K+++l++qieel  k + +++en +L+kkl+
  Gh_A13G0425  84 ASELKFWEKEVASLRQQLNDLQEYHRQLMGEELSGLSIKDLRNLENQLQMSLKSVRMRKDQILTNQIEELSLKGHHIHKENLELQKKLD 172
                  57789*********************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.146161IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-37160IPR002100Transcription factor, MADS-box
CDDcd002654.50E-43277No hitNo description
SuperFamilySSF554557.06E-32275IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-27323IPR002100Transcription factor, MADS-box
PfamPF003192.1E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-273859IPR002100Transcription factor, MADS-box
PfamPF014862.9E-2685171IPR002487Transcription factor, K-box
PROSITE profilePS5129715.4887177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGRGKIEIKK IEKSSSRQVT FSKRRNGLLK KAKELAILCD AEVGLIIFSS TAKLHHFASS  60
SMKSVIERYN KYREEYHHQL LDPASELKFW EKEVASLRQQ LNDLQEYHRQ LMGEELSGLS  120
IKDLRNLENQ LQMSLKSVRM RKDQILTNQI EELSLKGHHI HKENLELQKK LDLICQENTE  180
LQRKVDGNGT AEANEGSKSS SQSYGFNNGH DELQAPIVDL RLSQPQQLPD ADTSYRNLSL  240
F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-21174174MEF2C
5f28_B2e-21174174MEF2C
5f28_C2e-21174174MEF2C
5f28_D2e-21174174MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14701936}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017617787.11e-170PREDICTED: MADS-box transcription factor 23-like
SwissprotQ6EP495e-82MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A1U8KN751e-168A0A1U8KN75_GOSHI; MADS-box transcription factor 23-like isoform X3
TrEMBLA0A1U8KT721e-167A0A1U8KT72_GOSHI; MADS-box transcription factor 23-like isoform X1
STRINGGorai.013G054000.11e-168(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53024105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.12e-77AGAMOUS-like 21
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]