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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Gh_A13G0423 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
MIKC_MADS |
Protein Properties |
Length: 241aa MW: 27868.7 Da PI: 9.9029 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gh_A13G0423 | genome | NAU-NBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 79.4 | 2.6e-25 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k+ie +s rqvtfskRrng+lKKA+EL +LCdaev +iifsst kl+ ++s
Gh_A13G0423 9 KKIEKSSSRQVTFSKRRNGLLKKAKELAILCDAEVGLIIFSSTSKLHHFAS 59
68**********************************************986 PP
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2 | K-box | 71.6 | 2.4e-24 | 84 | 174 | 11 | 99 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGe..dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99
+++ + +++e+a L+++ + Lq+ qR+l+G+ +L+ Ls+k+Lq Le+qLe slk++R +K+++l++qi+el++k + +++en + +kkl+
Gh_A13G0423 84 ASELKFWKKEVASLRQQQNDLQEYQRQLKGKekELSGLSFKDLQGLENQLEMSLKRVRMRKDQILTNQIDELKRKGHHIDQENLKVHKKLD 174
57789*************************7337*****************************************************9985 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 1.9E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.216 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.14E-42 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 4.19E-32 | 2 | 75 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 9.1E-23 | 85 | 173 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.081 | 87 | 179 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 241 aa
Download sequence Send
to blast |
MGRGKIEIKK IEKSSSRQVT FSKRRNGLLK KAKELAILCD AEVGLIIFSS TSKLHHFASS 60 SMKSVIERYT KYEEEYHHQL LDPASELKFW KKEVASLRQQ QNDLQEYQRQ LKGKEKELSG 120 LSFKDLQGLE NQLEMSLKRV RMRKDQILTN QIDELKRKGH HIDQENLKVH KKLDLICHEN 180 TELQKKVNGN GTEEANESSK SLSHSYGFNN GYDYLQAPVV DLRLSLPQQL PDADTSKSKT 240 R
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14701936}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. |