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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Gh_A13G0323 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
B3 |
| Protein Properties |
Length: 345aa MW: 39723.3 Da PI: 9.6785 |
| Description |
B3 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_A13G0323 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 50 | 5.3e-16 | 5 | 95 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
ff +l+ s +l+++ l++p +f++++ + s+ l+ ++g +W+v + +k ++++++++GW+eF + +++g ++vF+++g+s f v++f
Gh_A13G0323 5 FFHKLILSTTLQEKKLRIPDNFVKKFRDE--LSVAAALTVPDGHVWRVGI--KKVDNKVWFQEGWQEFLERYYIRVGYVLVFRYEGNSAF--SVSIF 95
788999999**************999755..999****************..**********************************9999..88887 PP
|
| 2 | B3 | 64.6 | 1.5e-20 | 243 | 333 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
vl ps+ + ++++lp fae+h +g+ s ++l+ ++gr+W+v++ r k+g+ +++GW eF +n+L egD++vF+l +++e l+v+vfr
Gh_A13G0323 243 VLRPSYLYRGCIMYLPSCFAEKHlSGV---SDSIKLQLPDGRQWSVRC--RYKGGKAKFSRGWYEFTLENNLGEGDVCVFELLRSREIVLKVTVFR 333
78899******************8666...336***************..667777779**********************999888889999998 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 345 aa
Download sequence Send
to blast |
MPRPFFHKLI LSTTLQEKKL RIPDNFVKKF RDELSVAAAL TVPDGHVWRV GIKKVDNKVW 60
FQEGWQEFLE RYYIRVGYVL VFRYEGNSAF SVSIFNLYNS EINYQTNALV GTQYNHGKQY 120
PFEQLEDDEC ISPALQNLFG GSKLNNCINW GGDANLQTSK GVNNQPIRGS GAMKPEPKKR 180
GRKRKFDPNV QDSSTGREDD VDMRFRCYES ASARKRTVTA EERERAINAA KAFEPTNPFC 240
RVVLRPSYLY RGCIMYLPSC FAEKHLSGVS DSIKLQLPDG RQWSVRCRYK GGKAKFSRGW 300
YEFTLENNLG EGDVCVFELL RSREIVLKVT VFRVMESGGL MHRSQ
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4i1k_A | 2e-70 | 208 | 336 | 17 | 144 | B3 domain-containing transcription factor VRN1 |
| 4i1k_B | 2e-70 | 208 | 336 | 17 | 144 | B3 domain-containing transcription factor VRN1 |
| Search in ModeBase |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots and at lower levels in aerial parts. {ECO:0000269|PubMed:12114624}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
