PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A13G0322 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 391aa MW: 44543.8 Da PI: 8.1409 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.1 | 1.2e-16 | 21 | 106 | 5 | 97 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 + ++ l + l +p+kf++++g++ s tl+ +sgr W v+l rk +r++l GW Fv+ +++g f+vF++dg+s f +v+++ Gh_A13G0322 21 M-VASILHDKKLKIPNKFVKKFGHE--LSSIATLNVPSGRLWLVEL--RKENKRVWLDCGWTVFVEYYSICSGYFLVFRYDGNSHF--NVHIY 106 4.444555667***********965..78899**************..************************************99..66554 PP | |||||||
2 | B3 | 62.4 | 7.6e-20 | 292 | 382 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +l ps+v k l +p+ fa ++ +g+ +tl+ ++g++W v++iy ++s ++kGW eFv +n+L+egD++vF+l++++e l+v++fr Gh_A13G0322 292 ILRPSYVYKGIFLHIPRCFALRYlNGVDG---IVTLQVSEGKKWPVRCIYGQSS--WKFSKGWAEFVLDNNLDEGDVCVFELISTKEIVLKVTIFR 382 6789*******************866643...5***************777776..4599***********************9999999999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.39E-21 | 13 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.8E-23 | 13 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.943 | 16 | 109 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.15E-16 | 16 | 107 | No hit | No description |
SMART | SM01019 | 2.7E-12 | 17 | 109 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-13 | 19 | 106 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-25 | 281 | 382 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.34E-25 | 282 | 382 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.82E-23 | 287 | 382 | No hit | No description |
SMART | SM01019 | 1.2E-18 | 289 | 384 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.142 | 289 | 384 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.4E-19 | 292 | 382 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence Send to blast |
MSQPMGPSLP HKKSCIFYKL MVASILHDKK LKIPNKFVKK FGHELSSIAT LNVPSGRLWL 60 VELRKENKRV WLDCGWTVFV EYYSICSGYF LVFRYDGNSH FNVHIYNLNA SEINYQSNGL 120 NDSREPGHDK HLKDVEDGAF AQIMRSQPTS SSSCFLIDDD FDECVDHDRK KRKNSTFLDQ 180 KNNVDDLRAT VQSTRDKGIQ FNGVELTSAA DEGGLNFLNG TQKNTKEIKQ EIEPDIDEYK 240 SLGKSIVKEE LPAMNSPRSD DKKRRDATAE GKQIALRAAA MFKPDNPFCR VILRPSYVYK 300 GIFLHIPRCF ALRYLNGVDG IVTLQVSEGK KWPVRCIYGQ SSWKFSKGWA EFVLDNNLDE 360 GDVCVFELIS TKEIVLKVTI FRVLEDGVAV N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 8e-44 | 259 | 385 | 19 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 8e-44 | 259 | 385 | 19 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.21689 | 0.0 | boll |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and at lower levels in aerial parts. {ECO:0000269|PubMed:12114624}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016674965.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X1 | ||||
Refseq | XP_016674966.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X1 | ||||
Swissprot | Q8L3W1 | 2e-41 | VRN1_ARATH; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A1U8I9S0 | 0.0 | A0A1U8I9S0_GOSHI; B3 domain-containing transcription factor VRN1-like isoform X1 | ||||
STRING | Gorai.013G039700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1124 | 28 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 1e-44 | related to vernalization1 1 |
Publications ? help Back to Top | |||
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