PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Expression |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Gh_A13G0177

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GeBP

Protein Properties

Length: 367aa MW: 40070 Da PI: 5.3487

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A13G0177	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	132.4	1.7e-41	149	245	2	98
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 lfqrl+se+Dei+lL+G++d+ ak+g +p +d+++fyefvkksi+ +vsk ql++KirrLKkKfk++ k ++g++p+fsk+h+q++felsk+iWg+ Gh_A13G0177 149 LFQRLFSEDDEIALLKGMLDYSAKKGDDPCADMNEFYEFVKKSIHTDVSKVQLMDKIRRLKKKFKNNAGKNNKGEDPTFSKPHEQNAFELSKQIWGK 245 69*********************************************************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	4.8E-36	150	244	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MAPKRSNPIE VPPAASSSEE DEEVTSSGEV DEGSSTEEED EDDPKTQSTP LSQKSPSPRK 60 LETATPAIVK EESDESGSDS ESDTAAQIAI ATKPRCNKPL ASSSKRPGES ELDAKEAKRP 120 KKKVGEEGMA TAPVVEGVKK TGEDAKKLLF QRLFSEDDEI ALLKGMLDYS AKKGDDPCAD 180 MNEFYEFVKK SIHTDVSKVQ LMDKIRRLKK KFKNNAGKNN KGEDPTFSKP HEQNAFELSK 240 QIWGKEGISG KVASSTAKSN GKAKGNNKAE IAVKADLLSS SDKKIDDAVP VVSKSSSSFL 300 DKKFSLSDLE EAVVKVGLDI VDGEKKAALE AKWMKLQVAQ LEAYARRTEF VAEQAKLLLK 360 YYKSEEK

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MAPKRSNPIE VPPAASSSEE DEEVTSSGEV DEGSSTEEED EDDPKTQSTP LSQKSPSPRK  60
LETATPAIVK EESDESGSDS ESDTAAQIAI ATKPRCNKPL ASSSKRPGES ELDAKEAKRP  120
KKKVGEEGMA TAPVVEGVKK TGEDAKKLLF QRLFSEDDEI ALLKGMLDYS AKKGDDPCAD  180
MNEFYEFVKK SIHTDVSKVQ LMDKIRRLKK KFKNNAGKNN KGEDPTFSKP HEQNAFELSK  240
QIWGKEGISG KVASSTAKSN GKAKGNNKAE IAVKADLLSS SDKKIDDAVP VVSKSSSSFL  300
DKKFSLSDLE EAVVKVGLDI VDGEKKAALE AKWMKLQVAQ LEAYARRTEF VAEQAKLLLK  360
YYKSEEK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.1582	0.0	boll\| ovule\| root\| stem

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ751265	0.0	JQ751265.1 Gossypium hirsutum GL1-enhancer binding protein (GeBP) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016716604.1	0.0	PREDICTED: mediator-associated protein 1-like
TrEMBL	A0A1U8LTQ0	0.0	A0A1U8LTQ0_GOSHI; mediator-associated protein 1-like
STRING	Gorai.013G021200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM313	28	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00390.1	1e-28	DNA-binding storekeeper protein-related transcriptional regulator