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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Gh_A13G0101 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
Trihelix |
| Protein Properties |
Length: 374aa MW: 43329.5 Da PI: 8.099 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_A13G0101 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 85.9 | 4.9e-27 | 104 | 188 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
rW++qe+l+L+e+r +++ +++++++k+plW+e s+ m +e g++rs k+C+ek+enl k+ykk+k+++ +r ++ +++++f+qle
Gh_A13G0101 104 RWPRQETLTLLEIRIRLDPKFKEANQKGPLWDELSRIMaEEYGYQRSGKKCREKFENLYKYYKKTKQRKAGR--QDGKNYRFFRQLE 188
8*************************************7788****************************97..66678******97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 374 aa
Download sequence Send
to blast |
MEMVDQNGLP HLRRSLPMRT HFPVPHPEPT EPYFANINMA SPSPVPCHEP FIAPLPSRLV 60
RFSHNHYPSA SLTTGVAASA SIPSATTLFG GSRWGNITNG GNSRWPRQET LTLLEIRIRL 120
DPKFKEANQK GPLWDELSRI MAEEYGYQRS GKKCREKFEN LYKYYKKTKQ RKAGRQDGKN 180
YRFFRQLELL YGETTNQCPT VLYQTSNNPM NQRNHHEEEK KPGDQSLSVS NSSEFETSSS 240
ENNTDDEVSA FTKVKDFMES QMNKLIDSQD VWMERMLKAI EDKDQERLFK EEEWRRQETA 300
LLDKEHEFWV KERAWVEARD VALMEVVKNF TRKRTLEVSS SSSSAERPVG YTQQGISSLI 360
HSLGQAWNQD SRNI
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: First observed in the early-developing flower, in four zones between the initiating sepals and in their developing margins. Later detected in the margins of expanding sepals, petals and stamens, and in the leaf margins. {ECO:0000269|PubMed:15269176}. |
| Uniprot | TISSUE SPECIFICITY: Confined to flowers, at low levels. Also present in 7-days-old seedlings. Barely detectable in other tissues such as young seedlings, roots, stems, leaves and siliques (PubMed:15269176). Expressed in flower primordia, more precisely between newly arisen sepal primordia and also at the basal margins of developing sepals (PubMed:25697797). {ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:25697797}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}. |
