PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Expression |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Gh_A13G0040

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 213aa MW: 23676.1 Da PI: 8.2878

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A13G0040	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134.8	3.2e-42	48	147	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r da+sslvyeA++r+rdPvyG++g i++lqqq+++l+ae+++++ Gh_A13G0040 48 PCAACKLLRRRCAEECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPENQRADAASSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAEINAVR 145 7**********************************************************************************************999 PP DUF260 99 ee 100 +e Gh_A13G0040 146 AE 147 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.586	47	148	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.6E-42	48	145	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MCVFRERFDE IGKKIKREAD VVSFGGHHHQ MGRRHIMGSH GTLNTITPCA ACKLLRRRCA 60 EECPFSPYFS PHEPQKFASV HKVFGASNVS KMLMEVPENQ RADAASSLVY EANVRLRDPV 120 YGCMGAISAL QQQVQSLQAE INAVRAEIMK HKCREANLIP SPSHLALLSS GAVSIAAPPP 180 MPLPQPTTAA DYNTISDENV TYTLDNKYYI DKY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-47	48	161	11	124	LOB family transfactor Ramosa2.1
5ly0_B	2e-47	48	161	11	124	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017618787.1	1e-156	PREDICTED: LOB domain-containing protein 15-like
Swissprot	Q8L5T5	9e-78	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A2P5YHD3	1e-155	A0A2P5YHD3_GOSBA; Uncharacterized protein
STRING	Gorai.013G005900.1	1e-131	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1927	27	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	4e-79	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]