PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A12G2728

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 1034aa MW: 117455 Da PI: 8.0442

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A12G2728	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.8	3.3e-10	399	444	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r++WT+eEd+ ++ v+++G ++W Ia +g +Rt+ qc r+q Gh_A12G2728 399 RNPWTAEEDKNILLIVQEMGIDNWFDIAVSLGSNRTPFQCLARYQR 444 79******************************************96 PP
2	Myb_DNA-binding	42.3	1.8e-13	453	496	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT+eEd++l av+ +G +W ++a+t+ gRt+ qc +rw k Gh_A12G2728 453 REWTEEEDDQLRIAVEVFGESDWQSVASTLK-GRTGTQCSNRWKK 496 68**************************9.*********98 PP
3	Myb_DNA-binding	50.8	3.9e-16	506	549	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 grWT +Ed++l+ av ++G+++W++Ia+ ++ gRt qc++rw + Gh_A12G2728 506 GRWTRDEDKRLKVAVLLFGPKNWRKIAEVVP-GRTQVQCRERWVN 549 8****************************.*********87 PP
4	Myb_DNA-binding	41.1	4e-13	559	601	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT+eEd +l a++++G W+++a ++ Rt++qc rw ++ Gh_A12G2728 559 IWTEEEDSRLEAAIEEHGYC-WSKVATCVA-SRTDNQCWRRWKTL 601 5***************99.*****.*********976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	5.517	294	393	IPR017877	Myb-like domain
SMART	SM00717	0.0037	298	395	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-10	301	317	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.7E-10	366	406	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.41E-16	376	443	IPR009057	Homeodomain-like
PROSITE profile	PS50090	9.86	394	446	IPR017877	Myb-like domain
SMART	SM00717	1.3E-10	398	448	IPR001005	SANT/Myb domain
Pfam	PF00249	2.7E-9	399	444	IPR001005	SANT/Myb domain
CDD	cd00167	8.18E-7	401	446	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.2E-13	407	456	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.1E-19	431	501	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.84	447	498	IPR017930	Myb domain
SMART	SM00717	1.2E-11	451	500	IPR001005	SANT/Myb domain
Pfam	PF00249	2.0E-11	453	496	IPR001005	SANT/Myb domain
CDD	cd00167	6.94E-10	454	498	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.2E-16	457	501	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.975	499	555	IPR017930	Myb domain
SuperFamily	SSF46689	1.04E-24	503	598	IPR009057	Homeodomain-like
SMART	SM00717	9.4E-15	504	553	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.9E-18	506	554	IPR009057	Homeodomain-like
Pfam	PF00249	8.1E-15	506	549	IPR001005	SANT/Myb domain
CDD	cd00167	3.45E-12	507	551	No hit	No description
Gene3D	G3DSA:1.10.10.60	9.8E-16	555	601	IPR009057	Homeodomain-like
SMART	SM00717	3.3E-12	556	604	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	15.255	558	606	IPR017930	Myb domain
CDD	cd00167	2.08E-10	560	601	No hit	No description
Pfam	PF00249	5.4E-11	560	601	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1034 aa Download sequence Send to blast
MSLKDQYDTV NDEEDIDDVE LSGNENGVGF DEDMEALKKA CLRTGTDLNG LDIVSVDNER 60 PSTSTAASPA SADSGSEDDL EIFRSIRNRL ALSEDVYEPL SLKPLCTLPP ISSDEDAEDD 120 FETLRVIQKR FLAYSTDCTR KNSREDNVEK TEPIYMTRTP LKDATGNDIC ENFLDYVQTG 180 NISHVSSDNA EMQPLSLVQC DQSDVNVLST YKSSRFPKSA QLLFDAIKKN RSYQTFLRSR 240 ALSAKKDPRI QLISARKLRT FEEPEVNDKR VTADYGPLEN SSVASYRMAL IDFPLKLERK 300 NWSREERENL EKGIRQQFQE RALQVSVGWL STSDGSPQDG NNLDGIIATV KDLEITPERI 360 REFLPKVDWN QLASFYVKGH SGAECETRWL NHEDPLINRN PWTAEEDKNI LLIVQEMGID 420 NWFDIAVSLG SNRTPFQCLA RYQRSLNPCI LKREWTEEED DQLRIAVEVF GESDWQSVAS 480 TLKGRTGTQC SNRWKKSLHP TRQRVGRWTR DEDKRLKVAV LLFGPKNWRK IAEVVPGRTQ 540 VQCRERWVNS LDPALNVGIW TEEEDSRLEA AIEEHGYCWS KVATCVASRT DNQCWRRWKT 600 LHPEEVPLLQ EARKIRKAAL ISNFVDRESE RPALGPNDFN IQLPMITATS EPSKEKGKRR 660 RRRPESEKEN AAALRLSPEK RSDKSCRKGA QTTTGRNPPL ENNNCTEPAE DVTFQKKRKR 720 EPPSGNNNHT KPAHVAIQKK RKQPHSGHVN CSDRMQDGAV QTYKRKQQSE SSKFVESVQD 780 NCSSHLLSTL CMTGNHEAES FGSSLTVKRR KNHKASPKQF PKRSICTESH EEQYSICSEI 840 PMFSGGDDGA EVMQNSGVES EILCADDASR KAKARSKRKT CINSLTSKSS RTIVAEHFKN 900 LSATKNTKKN RTKQQQSKSR KSNKPSGDED GQTDGDHQTL ACFLRNKLKK RRCEIVDNAC 960 LSEGMDERSK IDQTQFGLQH CDGENGTNIE IVDVVNKTVA PRDIVREPSK INKEDITLAC 1020 LRKRLKKKRR VTIA

Sequence ? help Back to Top

Protein Sequence Length: 1034 aa Download sequence Send to blast

MSLKDQYDTV NDEEDIDDVE LSGNENGVGF DEDMEALKKA CLRTGTDLNG LDIVSVDNER  60
PSTSTAASPA SADSGSEDDL EIFRSIRNRL ALSEDVYEPL SLKPLCTLPP ISSDEDAEDD  120
FETLRVIQKR FLAYSTDCTR KNSREDNVEK TEPIYMTRTP LKDATGNDIC ENFLDYVQTG  180
NISHVSSDNA EMQPLSLVQC DQSDVNVLST YKSSRFPKSA QLLFDAIKKN RSYQTFLRSR  240
ALSAKKDPRI QLISARKLRT FEEPEVNDKR VTADYGPLEN SSVASYRMAL IDFPLKLERK  300
NWSREERENL EKGIRQQFQE RALQVSVGWL STSDGSPQDG NNLDGIIATV KDLEITPERI  360
REFLPKVDWN QLASFYVKGH SGAECETRWL NHEDPLINRN PWTAEEDKNI LLIVQEMGID  420
NWFDIAVSLG SNRTPFQCLA RYQRSLNPCI LKREWTEEED DQLRIAVEVF GESDWQSVAS  480
TLKGRTGTQC SNRWKKSLHP TRQRVGRWTR DEDKRLKVAV LLFGPKNWRK IAEVVPGRTQ  540
VQCRERWVNS LDPALNVGIW TEEEDSRLEA AIEEHGYCWS KVATCVASRT DNQCWRRWKT  600
LHPEEVPLLQ EARKIRKAAL ISNFVDRESE RPALGPNDFN IQLPMITATS EPSKEKGKRR  660
RRRPESEKEN AAALRLSPEK RSDKSCRKGA QTTTGRNPPL ENNNCTEPAE DVTFQKKRKR  720
EPPSGNNNHT KPAHVAIQKK RKQPHSGHVN CSDRMQDGAV QTYKRKQQSE SSKFVESVQD  780
NCSSHLLSTL CMTGNHEAES FGSSLTVKRR KNHKASPKQF PKRSICTESH EEQYSICSEI  840
PMFSGGDDGA EVMQNSGVES EILCADDASR KAKARSKRKT CINSLTSKSS RTIVAEHFKN  900
LSATKNTKKN RTKQQQSKSR KSNKPSGDED GQTDGDHQTL ACFLRNKLKK RRCEIVDNAC  960
LSEGMDERSK IDQTQFGLQH CDGENGTNIE IVDVVNKTVA PRDIVREPSK INKEDITLAC  1020
LRKRLKKKRR VTIA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h88_C	2e-28	368	592	4	155	MYB PROTO-ONCOGENE PROTEIN
1h89_C	2e-28	368	592	4	155	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	657	662	KRRRRR
2	907	913	KKNRTKQ
3	1025	1029	KKKRR
4	1025	1030	KKKRRV

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ526620	4e-48	HQ526620.1 Gossypium herbaceum clone NBRI_A_EYI1BW401A8HI1 simple sequence repeat marker, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016718327.1	0.0	PREDICTED: uncharacterized protein LOC107931053 isoform X1
TrEMBL	A0A1U8LUX3	0.0	A0A1U8LUX3_GOSHI; uncharacterized protein LOC107931053 isoform X1
STRING	Gorai.008G288900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6504	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.1	1e-180	myb domain protein 4r1