PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A12G2549 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Trihelix | ||||||||
Protein Properties | Length: 464aa MW: 53405.7 Da PI: 5.996 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 93.2 | 2.5e-29 | 39 | 123 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r+em+ ++r++ k+plWeevs+k++e g++rs+k+Ckek+en+ k+++++keg+++++ + +++++f+qlea Gh_A12G2549 39 RWPRQETLALLKIRSEMDVAFRDSGVKAPLWEEVSRKLAELGYNRSAKKCKEKFENVYKYHRRTKEGRSGKS--NGKNYRFFEQLEA 123 8********************************************************************974..4457*******85 PP | |||||||
2 | trihelix | 104.8 | 6.2e-33 | 303 | 388 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k+ev aLi++r++++ +++++ k+plWe++s +m++ g+ rs+k+Ckekwen+nk++k++ke++kkr +e+s+tcpyf+ql+a Gh_A12G2549 303 RWPKDEVEALIRLRTNLDMQYQDTGPKGPLWEDISTAMKKLGYDRSAKRCKEKWENMNKYFKRVKESNKKR-PEDSKTCPYFHQLDA 388 8*********************************************************************8.99***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.399 | 32 | 96 | IPR017877 | Myb-like domain |
SMART | SM00717 | 2.7E-4 | 36 | 98 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 9.01E-24 | 38 | 103 | No hit | No description |
Pfam | PF13837 | 1.8E-19 | 38 | 124 | No hit | No description |
PROSITE profile | PS50090 | 7.677 | 296 | 360 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-5 | 299 | 360 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.001 | 300 | 362 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.91E-5 | 301 | 373 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 1.0E-23 | 302 | 389 | No hit | No description |
CDD | cd12203 | 1.07E-24 | 302 | 367 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 464 aa Download sequence Send to blast |
MENSSFPESN TVGDNVSLEN EEEAKVKNEE SEGNFSGNRW PRQETLALLK IRSEMDVAFR 60 DSGVKAPLWE EVSRKLAELG YNRSAKKCKE KFENVYKYHR RTKEGRSGKS NGKNYRFFEQ 120 LEALDHHPSL VPPASGDINT SVEPLNVIHD AIPFSVGNPA SNFNETSTST TSSSGKESDG 180 TRKKKRKLTD FFERLMREMM EKQENLQKKF IEAIEKSEQD RMAREEAWKV QELARLKRER 240 ELLVQERSIA AAKDAAVLAF LQKFSDQTTS VQLPDISFAV EKVVDRQENS NGSESYMHLS 300 TSRWPKDEVE ALIRLRTNLD MQYQDTGPKG PLWEDISTAM KKLGYDRSAK RCKEKWENMN 360 KYFKRVKESN KKRPEDSKTC PYFHQLDALY KEKTKTIDGS GYELKPEELL MHMMGAQEER 420 LHQESATEDV ESENVNQNRE ENRNAEGDAY QIVANDPSPM PIIG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 182 | 187 | KKKRKL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.24549 | 0.0 | embryo| ovule |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016712238.1 | 0.0 | PREDICTED: trihelix transcription factor GT-2-like | ||||
Swissprot | Q39117 | 1e-126 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | A0A1U8LFT1 | 0.0 | A0A1U8LFT1_GOSHI; trihelix transcription factor GT-2-like | ||||
STRING | Gorai.008G099700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5995 | 28 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 1e-121 | Trihelix family protein |