PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Gh_A12G2526

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 112aa MW: 13006.1 Da PI: 8.6533

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A12G2526	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	38	2.9e-12	15	95	14	89
T-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS B3 14 grlvlpkkfaeeh...ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 +rl+lp +++ + +g++e+++tl+++d W+++++ ++ +r +++ W +Fv++++L++gD+v F+ d++ + Gh_A12G2526 15 RRLILPIDCLPALprfEGSHENGITLQVMDDVEILWNFRCKKrNGAADRLAIETDWIQFVNSKKLRSGDIVAFYKDDDrVS 95 469999999888888988999*****************764555666***********************7644333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.1E-13	3	93	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.43E-10	3	92	No hit	No description
SMART	SM01019	0.0074	4	102	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	2.22E-10	10	101	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	9.3E-10	15	97	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 112 aa Download sequence Send to blast
MQLFARALTS IEVERRLILP IDCLPALPRF EGSHENGITL QVMDDVEILW NFRCKKRNGA 60 ADRLAIETDW IQFVNSKKLR SGDIVAFYKD DDRVSGTLCK IEVKRRTCMY NK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012435299.1	1e-75	PREDICTED: auxin response factor 8-like
TrEMBL	A0A2P5YRH0	1e-77	A0A2P5YRH0_GOSBA; Uncharacterized protein
STRING	Gorai.008G027000.1	1e-45	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM28224	2	3