PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A12G2312

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 690aa MW: 76852.9 Da PI: 8.3234

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A12G2312	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.7	8.9e-05	77	98	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C++ F ++ n++rHir+H Gh_A12G2312 77 KCDKCSREFCSPINYRRHIRVH 98 7********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.0098	76	98	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.118	76	103	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	78	99	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 690 aa Download sequence Send to blast
MPVAKLKAAN SANLMKSEDL NDSLDTFIRQ AIGKEPFLPF SRTGDSPVQW IQLLHALDQQ 60 DIPGWPLLSP LKVQTQKCDK CSREFCSPIN YRRHIRVHHR LKKLDKDSAK NRDLLAAFWD 120 KLSEDEAKEV ISFKDVLLEG VPGSSVIKSL TTHVKRQGFS ALPQVCLRAG SALLDLVQAR 180 PSIFPISSQE LFSILDDASE RTFLCGAAVS MQKYIFDGEA GKIGLETKNL VACTSFLVEQ 240 KLVKAWLADK DAEALRCQKL LVEEEEAAQK RQVELLERKR QKKLRQKEQK AKEQRHWELE 300 ESKPNMDDLL EVNTLAETSS PSAVDSDGQN PVMSTDQIIP SVEPNLFSKL LENVDYEIQT 360 GFSNGYSDPG ISQNIERRTE QVGRRHIVVA RRQTPPNSQR GVLNDFHASQ NSHGFKCGGI 420 NKHGTNRERF APIGNGNKIW SQKPKAANEG ESLKIRVEKQ AANQLNQNNN HELLIGSISV 480 TLENYSNHDG NNLAEACDRS LAECRIPKNN VQEKSSKLDP FQGVTNRSTI KFWRPVSRHE 540 SKSSSPVQNG ASESEVQVIA EKDGARTSCN ETCLRSCSTD GIDGVVSMDL ISTLKERVQP 600 ESLQFDSHTA KAILAQRWKE ALAGEHVTLV LTPNLDPPGC SEIEADSSEK LVVKARAFEA 660 STAGPARGKF RRNPEKGAKI KYIPKQRSAI

Sequence ? help Back to Top

Protein Sequence Length: 690 aa Download sequence Send to blast

MPVAKLKAAN SANLMKSEDL NDSLDTFIRQ AIGKEPFLPF SRTGDSPVQW IQLLHALDQQ  60
DIPGWPLLSP LKVQTQKCDK CSREFCSPIN YRRHIRVHHR LKKLDKDSAK NRDLLAAFWD  120
KLSEDEAKEV ISFKDVLLEG VPGSSVIKSL TTHVKRQGFS ALPQVCLRAG SALLDLVQAR  180
PSIFPISSQE LFSILDDASE RTFLCGAAVS MQKYIFDGEA GKIGLETKNL VACTSFLVEQ  240
KLVKAWLADK DAEALRCQKL LVEEEEAAQK RQVELLERKR QKKLRQKEQK AKEQRHWELE  300
ESKPNMDDLL EVNTLAETSS PSAVDSDGQN PVMSTDQIIP SVEPNLFSKL LENVDYEIQT  360
GFSNGYSDPG ISQNIERRTE QVGRRHIVVA RRQTPPNSQR GVLNDFHASQ NSHGFKCGGI  420
NKHGTNRERF APIGNGNKIW SQKPKAANEG ESLKIRVEKQ AANQLNQNNN HELLIGSISV  480
TLENYSNHDG NNLAEACDRS LAECRIPKNN VQEKSSKLDP FQGVTNRSTI KFWRPVSRHE  540
SKSSSPVQNG ASESEVQVIA EKDGARTSCN ETCLRSCSTD GIDGVVSMDL ISTLKERVQP  600
ESLQFDSHTA KAILAQRWKE ALAGEHVTLV LTPNLDPPGC SEIEADSSEK LVVKARAFEA  660
STAGPARGKF RRNPEKGAKI KYIPKQRSAI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	276	283	ERKRQKKL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.19930	0.0	boll\| ovule

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017635056.1	0.0	PREDICTED: uncharacterized protein LOC108477111
TrEMBL	A0A0D2T826	0.0	A0A0D2T826_GOSRA; Uncharacterized protein
STRING	Gorai.008G275600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5680	25	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-153	C2H2-like zinc finger protein